« Back to Eutrema salsugineum search


Detailed information on CNT30114596


BLAST search results

BLAST vs Swiss-Prot:
sp|P69325|UBIQP_SOYBN, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 3e-139

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701241Eutrema salsugineumQuercus lobata86.0686.6582.45889forward
CNT30274489Eutrema salsugineumChenopodium quinoa88.877583.12918forward
CNT30727322Eutrema salsugineumCorchorus capsularis88.7772.1582.66917forward
CNT30169882Eutrema salsugineumPistacia vera88.1944.1683.32911forward
CNT30359535Eutrema salsugineumLactuca sativa84.951.9283.81877forward
CNT3032244Eutrema salsugineumTheobroma cacao88.7779.8182.44917forward
CNT30324534Eutrema salsugineumAsparagus officinalis86.2569.6682.27891forward
CNT30334109Eutrema salsugineumCynara cardunculus86.3555.5484.3892forward

Expression of CNT30114596

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MPSLSWILAFTLSMVSELSTSKVMVFPVKVLTKICIPPRRRRTK*

>peptide 2 (42 aa)
MCVHPQAACRRRSTFAGPVGYLPCLEFWLSRCRWCQSSRPPK*

>peptide 3 (60 aa)
MKGRLLLDVVVRKSTAIFELLSGEDQPLLVWWDSLLVLDLSLHVVDGVRTLDLQSDRLSR*

>peptide 4 (31 aa)
MVSELSTSKVMVFPVKVFTKICIPPRSLSTR*

>peptide 5 (31 aa)
MVSELSTSKVIVFPVRVLTKICIPPRSLRTK*

Sequence

>CNT30114596
CTTTAGATAAGAGAAAGAAAGAAGCAAACATAGGTCAAGACCCCAAAACACAAACCACGAGACATTTTTAGAGAAACTGAAAAGAGTAATGACTTAGAAC
ATAGCATGAAGAAGATTTAGAAACCACCACGAAGACGGAGGACCAAGTGAAGAGTCGACTCTTTCTGAATGTTGTAATCAGCAAGTGTGCGACCATCCTC
GAGCTGTTTACCAGCGAAGATGAGACGCTGCTGATCTGGGGGGATGCCTTCTTTGTCTTGGATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCA
ACCTCCAAAGTGATGGTCTTCCCGGTCAAGGTCTTGACGAAAATCTGCATACCACCACGAAGACGGAGGACCAAGTGAAGTGTCGACTCCTTCTGAATGT
TGTAATCGGCCAATGTGCGTCCATCCTCAAGCTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCCGGTGGGATACCTTCCTTGTCTTGAATTTTGGCTTT
CACGTTGTCGATGGTGTCAGAGCTCTCGACCTCCAAAGTGATGGTTTTTCCGGTCAAAGTTTTCACGAAGATTTGCATACCACCACGGAGCCTGAGCACT
AGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGAGTACGGCCATCTTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGTGGGA
TTCCCTCCTTGTCTTGGATCTTAGCCTTCACGTTGTCGATGGTGTCAGAACTCTCGACCTCCAAAGTGATCGTCTTTCCCGTTAGGGTTTTGACGAAGAT
CTGCATACCACCACGGAGCCTGAGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAAGTCCGGCCGTCTTCCAACTGCTTTCCGGCG
AAGATAAGCCTCTGCTGATCCGGAGGAATTCCTTCCTTATCCTGGATTTTGGCTTTAACGTTATCGATGGTGTCAGAGCTTTCCACCTCGAGGGTGATAG
TCTTGCCGGTGAGAGTCTTAACAAAGATCTGCA