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Detailed information on CNT30114434


BLAST search results

BLAST vs Swiss-Prot:
sp|P06353|H33_HORVU, E-value = 4e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697930Eutrema salsugineumOryza sativa32.9130.0580.92131forward
CNT30675375Eutrema salsugineumSetaria viridis17.0924.1189.7168forward
CNT30521777Eutrema salsugineumSetaria italica32.9116.4283.21131forward
CNT30315797Eutrema salsugineumCorylus avellana26.1315.7385.58104forward
CNT30698329Eutrema salsugineumQuercus lobata20.8517.5889.1683forward
CNT30376827Eutrema salsugineumArabidopsis thaliana41.4669.9288.48165forward
CNT30267640Eutrema salsugineumChenopodium quinoa32.9118.0482.44131forward
CNT3069242Eutrema salsugineumQuercus suber20.8515.4989.1683forward
CNT30628401Eutrema salsugineumVigna unguiculata32.4138.3981.4129forward
CNT30200079Eutrema salsugineumPisum sativum24.6224.3887.7698forward
CNT30712448Eutrema salsugineumGlycine max28.1426.3585.71112forward
CNT3048083Eutrema salsugineumPrunus dulcis23.1213.1186.9692forward
CNT30170700Eutrema salsugineumPistacia vera20.615.884.1582forward
CNT30125320Eutrema salsugineumPhyscomitrium patens31.9113.0583.46127forward
CNT30186142Eutrema salsugineumSecale cereale20.131.379080forward
CNT30304662Eutrema salsugineumTriticum aestivum26.1320.1986.54104forward
CNT30221211Eutrema salsugineumHordeum vulgare30.6510.690.16122forward
CNT30565750Eutrema salsugineumActinidia chinensis25.389.1982.18101forward
CNT30591253Eutrema salsugineumMusa acuminata33.4242.6384.96133forward
CNT3084857Eutrema salsugineumVigna radiata23.877.7483.1695forward
CNT30443502Eutrema salsugineumAegilops tauschii26.1316.886.54104forward
CNT30255419Eutrema salsugineumAvena sativa34.4225.785.4137forward
CNT30447268Eutrema salsugineumSaccharum spontaneum33.6734.3688.81134forward
CNT30141394Eutrema salsugineumLolium perenne20.112.489080forward
CNT306284Eutrema salsugineumZea mays14.8227.5789.8359forward
CNT30605939Eutrema salsugineumGossypium raimondii42.9631.0387.13171forward
CNT30686633Eutrema salsugineumTriticum urartu17.0924.5589.7168reverse complement
CNT30361473Eutrema salsugineumSorghum bicolor29.1521.5687.93116forward
CNT30596369Eutrema salsugineumOryza meridionalis21.1130.1189.2984forward
CNT30358858Eutrema salsugineumLactuca sativa37.4425.7881.21149forward
CNT30154413Eutrema salsugineumPrunus persica34.4235.489.05137forward
CNT30418220Eutrema salsugineumPapaver somniferum40.4537.4481.37161forward
CNT3022780Eutrema salsugineumPopulus trichocarpa22.8636.8483.5291forward
CNT30329187Eutrema salsugineumDioscorea rotundata37.9438.9284.11151forward
CNT30148402Eutrema salsugineumBrachypodium distachyon40.232.5982.5160forward

Expression of CNT30114434

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MNGAQVCVLKQTHKIRFCSLLKCKHSMALETQIS

>peptide 2 (81 aa)
QQQKVFNIAKEATIPTTKRRDLNTTQIIKTTRQEETNRHHSFQSLLKPKAFKALSNSNYLFSRTNPHSHIPNTNTLKHVLL*

Sequence

>CNT30114434
TCAACAACAAAAGGTGTTTAATATTGCCAAAGAAGCAACAATACCCACCACAAAACGTAGAGATCTAAACACAACGCAAATCATAAAAACGACTAGACAA
GAAGAAACAAACCGTCATCATAGTTTTCAAAGTCTCCTAAAACCAAAAGCTTTTAAAGCATTATCTAATTCCAACTATCTATTTAGTAGAACCAACCCAC
ATTCACATATCCCCAACACCAACACACTTAAGCACGTTCTCCTCTGATCCTGCGAGCGAGTTGGATGTCCTTAGGCATGATGGTGACACGCTTGGCATGA
ATGGCGCACAGGTTTGTGTCCTCAAACAGACCCACAAGATACGCTTCTGCAGCCTCCTGAAGTGCAAGCACAGCATGGCTCTGGAAACGCAGATCAGT