Detailed information on CNT30114131


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FUB7|CHSY_HYPAN, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30564019Ficus caricaActinidia chinensis21.8644.9487.99333forward

Expression of CNT30114131

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MMNSTHALDMFPYSLSTCLVARIFSGFKPHLASTWSRMAGPPGCAIQKIEFQSEIPRGLKASVKDFSTFFEISPGTSLSR*

>peptide 2 (61 aa)
VEFPPIAKEIIQRKKKKENILKEPKQSTMMVTYIYIYRYIYIYISTEPSRLPRYGAQQSQL*

>peptide 3 (35 aa)
MVPCKHTGWGFPLGSLHLSTCNAFLSWISRLQKRL*

>peptide 4 (43 aa)
MSIDRTLTVGEDCLGCRNQFKNGLLNLRNRICSDNQSSRTVTK*

>peptide 5 (42 aa)
MEHNSLNCEPRAKTKQHSPFESFSGGLESVRGTLPPHLVHDE*

>peptide 6 (51 aa)
MSTPLVVQKIKWVIFDLGWPHSLMALVAASFPNLGTSTTTISCLASNDGAM*

>peptide 7 (50 aa)
MKNRSPIMKSIFFHEGREHTRFSFRDAKIDVYKLFPKLILTFNFSIEEKY*

>peptide 8 (94 aa)
MGFSTSGIGSAPTIRAAAPSPNRAWPTRLSRWVSLGPRKVTAVISEQTTRTRAPLLFSARSLARRSTVPPAKQPCWYIMRRLTDGRRPKSLVSW*

Sequence

>CNT30114131
GTAGAATTCCCCCCCATAGCTAAAGAAATAATACAAAGAAAAAAGAAAAAAGAAAATATTTTAAAAGAACCAAAACAAAGCACAATGATGGTAACATATA
TATATATATATAGATATATATATATATATATATCCACCGAACCCTCTAGATTGCCACGCTATGGAGCACAACAGTCTCAACTGTGAGCCCAGGGCCAAAA
CCAAACAGCACTCCCCATTCGAGTCCTTCTCCGGTGGTCTTGAGTCCGTCCGCGGCACACTTCCTCCTCATCTCGTCCATGATGAATAGCACACATGCGC
TCGACATGTTTCCGTACTCGCTAAGCACGTGCCTCGTGGCGCGCATTTTTTCCGGCTTCAAACCACACTTGGCTTCTACTTGGTCAAGAATGGCTGGTCC
ACCTGGGTGTGCGATCCAGAAAATAGAGTTCCAGTCTGAGATTCCCAGAGGTTTAAAGGCCTCTGTCAAGGACTTTTCAACATTCTTTGAAATAAGCCCG
GGAACATCCTTGAGCAGGTGAAATGTAAGCCCAACTTCACGGAGATGTCCATCGATCGCACCCTCACTGTCGGGGAGGATTGTTTGGGCTGCCGAAACCA
ATTCAAAAATGGGCTTCTCAACCTCCGGAATCGGATCTGCTCCGACAATCAGAGCAGCCGCACCGTCACCAAATAGGGCTTGGCCCACAAGACTGTCGAG
GTGGGTGTCGCTGGGTCCACGGAAGGTGACGGCAGTGATCTCTGAGCAGACGACGAGGACACGAGCCCCTTTGTTGTTCTCAGCAAGGTCCTTGGCAAGG
CGGAGCACCGTGCCACCGGCAAAGCAACCCTGTTGGTACATCATGAGGCGCTTGACGGATGGGCGGAGACCCAAGAGCTTAGTGAGTTGGTAGTCAGCCC
CGGGCATGTCTACGCCGCTAGTGGTGCAAAAGATCAAGTGGGTGATTTTTGACTTGGGTTGGCCCCATTCCTTGATGGCCTTGGTGGCAGCCTCTTTTCC
CAATTTGGGTACCTCTACCACCACCATATCTTGTCTTGCATCCAACGATGGTGCCATGTAAGCACACAGGTTGGGGTTTTCCTTTAGGATCTCTTCATTT
AAGTACATGTAACGCTTTTTTATCATGGATTTCTCGCCTGCAAAAACGTTTATAGCGGCAAAGAGAACGTTAGAGGAGTTGAGCTGTCATATCAATTAGC
ACTTCTCATATTTTGAACAATTAAGCTGTCTGTTAATTTTATGAAAAATAGGTCCCCGATAATGAAGTCAATTTTCTTTCATGAAGGAAGAGAACACACG
AGATTCAGCTTTAGGGATGCAAAAATAGATGTATATAAATTATTTCCAAAATTGATCTTGACATTCAATTTTAGTATAGAAGAGAAATATTAAAAAAACT
AGCTCATCAAGCCACTAACGGACAACTGATTAGCAAAAACCATCCAATGTCACAAACATAACAAATAAAATTATATGTACGTGGTGTTCAATTTTGCTAG
AGAATCAATAAAATAGATACTTA