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Detailed information on CNT30114130


BLAST search results

BLAST vs Swiss-Prot:
sp|P51076|CHSY_FRAAN, E-value = 8e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30156309Ficus caricaPistacia vera79.6267.0282.8500forward
CNT30597791Ficus caricaFraxinus excelsior11.3123.7585.9271forward
CNT30355925Ficus caricaLactuca sativa15.1321.2188.4295forward

Expression of CNT30114130

Peptides detected in this lncRNA

>peptide 1 (43 aa)
SAHFLLISSKMNSTHALDMLPYSLSTCLVARSFSGFNPHLAST*

>peptide 2 (43 aa)
MAGPPGCAIQKIEFQSEMPRGLNASDKDFSMFFEISPGTSLRR*

>peptide 3 (31 aa)
LGALPPHLIQNEQHTCARHVTVLAKHVPCGA*

>peptide 4 (63 aa)
MAPSLSGKIVCAADTNSNRGFSTSGVGSAPMIIAAAPSPNKACPTRLSRWVSLGPRKVTAVISE

Sequence

>CNT30114130
CCTCGGCGCACTTCCTCCTCATCTCATCCAAAATGAACAGCACACATGCGCTAGACATGTTACCGTACTCGCTAAGCACGTGCCTTGTGGCGCGTAGTTT
TTCAGGCTTCAACCCGCACTTGGCCTCTACTTGATCGAGAATGGCAGGCCCACCCGGGTGTGCAATCCAGAAAATAGAGTTCCAATCTGAGATGCCAAGA
GGTTTGAATGCTTCAGATAAGGACTTCTCAATGTTCTTTGAAATAAGCCCAGGAACATCTTTGAGGAGGTGAAATGTAAGTCCGACTTCACGAAGATGCC
CATCAATGGCCCCTTCACTATCGGGTAAGATTGTTTGAATGCTTCAGTTAAGGACTTCTCAATGTTCTTTGAAATAAGCCCAGGAACATCCTTGAGGAGG
TGAAATGTAAGTCCGACTTCACGAAGATGCCCATCAATGGCCCCTTCACTATCGGGTAAGATTGTTTGTGCTGCGGACACCAATTCGAACAGGGGTTTTT
CGACGTCGGGAGTAGGATCAGCCCCAATGATCATAGCAGCTGCACCATCACCAAATAAGGCTTGTCCAACAAGGCTGTCAAGATGGGTGTCACTCGGACC
ACGGAAGGTAACAGCTGTGATCTCTGAG