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Detailed information on CNT30114127


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FUB7|CHSY_HYPAN, E-value = 3e-152

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30564018Ficus caricaActinidia chinensis4341.9783.89298forward

Expression of CNT30114127

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MMNSTHALDMFPYSLSTCLVARIFSGFKPHLASTWSRMAGPPGCAIQKIEFQSEIPRGLKASVKDFSTFFEISPGTSLSR*

>peptide 2 (89 aa)
MAPSLSGRIVCAAETNSKMGFSTSGIGSAPTIRAAAPSPNKAWPTRLSRWVSLGPRKVTAVISEQTTRTRAPLLFSARSLARRSTVPPAK

>peptide 3 (51 aa)
PPNPLDCHAMEHNSLNCEPRAKTKQHSPFESFSGGLESVRGTLPPHLVHDE*

Sequence

>CNT30114127
TCCACCGAACCCTCTAGATTGCCACGCTATGGAGCACAACAGTCTCAACTGTGAGCCCAGGGCCAAAACCAAACAGCACTCCCCATTCGAGTCCTTCTCC
GGTGGTCTTGAGTCCGTCCGCGGCACACTTCCTCCTCATCTCGTCCATGATGAATAGCACACATGCGCTCGACATGTTTCCGTACTCGCTAAGCACGTGC
CTCGTGGCGCGCATTTTTTCCGGCTTCAAACCACACTTGGCTTCTACTTGGTCAAGAATGGCTGGTCCACCTGGGTGTGCGATCCAGAAAATAGAGTTCC
AGTCTGAGATTCCCAGAGGTTTAAAGGCCTCTGTCAAGGACTTTTCAACATTCTTTGAAATAAGCCCGGGAACATCCTTGAGCAGGTGAAATGTAAGTCC
AACTTCCCGAAGATGTCCATCGATGGCACCCTCACTATCGGGTAGGATTGTTTGCGCTGCAGAAACCAATTCAAAAATGGGCTTCTCAACCTCAGGAATC
GGATCTGCCCCAACGATCAGAGCAGCTGCACCATCACCAAATAAGGCTTGGCCCACAAGACTATCAAGGTGGGTGTCGCTGGGCCCACGGAAGGTGACGG
CAGTGATCTCTGAGCAGACGACGAGGACACGAGCCCCTTTGTTGTTCTCAGCAAGGTCCTTGGCAAGGCGGAGCACCGTGCCACCGGCAAAGC