Detailed information on CNT30114125


BLAST search results

BLAST vs Swiss-Prot:
sp|A0AMG9|CHSH4_HUMLU, E-value = 1e-176

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378024Ficus caricaArabidopsis thaliana18.2625.5983.69141forward
CNT30281985Ficus caricaChenopodium quinoa27.338.8479.15211forward
CNT30524897Ficus caricaPhaseolus vulgaris75.7895.2878.12585forward
CNT3088050Ficus caricaVigna radiata37.3157.3782.29288forward
CNT3074040Ficus caricaBrassica juncea13.8624.2185.98107forward
CNT30365392Ficus caricaSorghum bicolor34.4645.8680.83266forward
CNT3030385Ficus caricaTheobroma cacao19.0436.8487.76147forward

Expression of CNT30114125

Peptides detected in this lncRNA

>peptide 1 (94 aa)
MGFSTSGIGSAPTIRAAAPSPNRAWPTRLSRWVSLGPRKVTAVISEQTTRTRAPLLFSARSLARRRTVPPAKQPCWYIMRRLTDGRRPNSLVSW*

>peptide 2 (96 aa)
PVVLSPSAAHFLLISSMMNSTHALDMFPYSLSTCLVARIFSGFKPHLASTWSRMAGPPGCAIQKIEFQSEIPRGLKASVKDFSTFFEISPGTSLSR*

>peptide 3 (43 aa)
MSIDRTLTVGEDCLGCRNQFKNGLLNLRNRICSDNQSSRTVTK*

Sequence

>CNT30114125
CCGGTGGTCTTGAGTCCGTCCGCGGCACACTTCCTCCTCATCTCGTCCATGATGAATAGCACACATGCGCTCGACATGTTTCCGTACTCGCTAAGCACGT
GCCTCGTGGCGCGCATTTTTTCCGGCTTCAAACCACACTTGGCTTCTACTTGGTCAAGAATGGCTGGTCCACCTGGGTGTGCGATCCAGAAAATAGAGTT
CCAGTCTGAGATTCCCAGAGGTTTAAAGGCCTCTGTCAAGGACTTTTCAACATTCTTTGAAATAAGCCCGGGAACATCCTTGAGCAGGTGAAATGTAAGC
CCAACTTCACGGAGATGTCCATCGATCGCACCCTCACTGTCGGGGAGGATTGTTTGGGCTGCCGAAACCAATTCAAAAATGGGCTTCTCAACCTCCGGAA
TCGGATCTGCTCCGACAATCAGAGCAGCCGCACCGTCACCAAATAGGGCTTGGCCCACAAGACTGTCGAGGTGGGTGTCGCTGGGCCCACGGAAGGTGAC
GGCTGTGATCTCTGAGCAGACGACGAGGACACGAGCCCCTTTGTTGTTCTCAGCGAGGTCCTTGGCAAGGCGGAGAACCGTGCCACCGGCAAAGCAACCC
TGTTGGTACATCATGAGGCGCTTGACGGATGGACGGAGGCCCAATAGCTTAGTGAGTTGGTAGTCAGCTCCAGGCATGTCCACACCACTGGTGGTGCAAA
ACACCAAGTGAGTGATTTTTGACTTAGGCTGTCCCCATTCCTTGATGGCCTTGGTGGCAGCCTCTTTTCCCA