Detailed information on CNT30114122


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FUB7|CHSY_HYPAN, E-value = 7e-148

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30700733Ficus caricaQuercus lobata32.0586.781.64365forward

Expression of CNT30114122

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MAGPPGCAIQKIEFQSEMPRGLNASVKDFSMFFEISPGTSLRR*

>peptide 2 (41 aa)
QKSYISPCSLRFHIEMEISVVFLKCLQTMKHDFMKKIKRIM*

>peptide 3 (77 aa)
MATLWSTTVSTLSPGPKPNRTPHSSPSPVVLTPSSAHFLLISSKMNSTHALDMLPYSLSTCLVARSFSGFNPHLAST*

>peptide 4 (49 aa)
KILYFSLFSTFPHRNGNLSSIPKVPANDETRFHEENKAYYVIYELSARS*

>peptide 5 (99 aa)
MAPSLSGKIVCAADTNSNRGFSTSGVGSAPMIIAAAPSPNKACPTRLSRWVSLGPRKVTAVISEHTTSTRAPLLFSARSLARRSTVPPAKHPCWYIMSRL

>peptide 6 (95 aa)
MVSNTKFIKKRQHRITKKKKKTKKKIKNTLNGNTVEHHGLNTESRSKTKQNSPLESFSGGLDTILGALPPHLIQNEQHTCARHVTVLAKHVPCGA*

Sequence

>CNT30114122
CAAAAATCCTATATTTCTCCTTGTTCTCTACGTTTCCACATCGAAATGGAAATCTCAGTAGTATTCCTAAAGTGCCTGCAAACGATGAAACACGATTTCA
TGAAGAAAATAAAGCGTATTATGTGATTTATGAACTATCTGCTAGGTCCTGATAGATGGATTATCAAAACCTGTTAACACAGATAGGTAACTAATGCGAA
TACTTGATTCGTTTGCACAGATAAATTAATTGCAGTAGTTAACACAACACGAAATAGTTACAAACTTAAGATATCTGTGACCCAACATAAATATAGTGTA
TTTAATAAAGAATTGCTACGTTATTCCGTTTGGCTTTGCAAGTATGGTGAGCAACACCAAATTTATCAAGAAACGACAACATAGAATCACAAAAAAAAAA
AAAAAAACAAAAAAAAAAATTAAGAACACTCTAAATGGCAACACTGTGGAGCACCACGGTCTCAACACTGAGTCCAGGTCCAAAACCAAACAGAACTCCC
CACTCGAGTCCTTCTCCGGTGGTCTTGACACCATCCTCGGCGCACTTCCTCCTCATCTCATCCAAAATGAACAGCACACATGCGCTAGACATGTTACCGT
ACTCGCTAAGCACGTGCCTTGTGGCGCGTAGTTTTTCAGGCTTCAACCCGCACTTGGCCTCTACTTGATCGAGAATGGCAGGCCCACCCGGGTGTGCAAT
CCAGAAAATAGAGTTCCAATCTGAGATGCCAAGAGGTTTGAATGCTTCAGTTAAGGACTTCTCAATGTTCTTTGAAATTAGCCCAGGAACATCCTTGAGG
AGGTGAAATGTAAGTCCGACTTCACGAAGATGCCCATCAATGGCCCCTTCACTATCGGGTAAAATTGTTTGTGCTGCGGACACCAATTCGAACAGGGGTT
TTTCGACGTCGGGAGTAGGATCAGCCCCAATGATCATAGCAGCTGCACCATCACCAAATAAGGCTTGTCCAACAAGGCTGTCAAGATGGGTGTCACTCGG
ACCACGGAAGGTAACAGCAGTGATCTCTGAACACACAACAAGCACACGGGCCCCTTTGTTGTTCTCCGCGAGGTCCTTGGCAAGGCGGAGTACCGTGCCA
CCGGCGAAGCACCCTTGTTGGTACATCATGAGCCGCTTG