Detailed information on CNT30113924


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 4e-86

BLAST vs NONCODE:
NONGMAT000502, E-value = 7e-72

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30546134Ficus caricaIpomoea triloba60.478.8985.29639forward
CNT30729068Ficus caricaCorchorus capsularis61.535284.18651forward
CNT30564402Ficus caricaActinidia chinensis43.2923.1787.34458forward
CNT3033611Ficus caricaTheobroma cacao61.5357.2184.33651forward

Expression of CNT30113924

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MKSALLLDVVVGEGSAVPPAAFRRRSRRCWFRRNPFLILDLGP*

>peptide 2 (41 aa)
NTTFIYYKTKILIPSGSYSTKLKENIFVSFWFPSNQINRKH*

>peptide 3 (81 aa)
MVSELSTSRVIEYGPVRVFTNICIPPRSLSNQMQRRLLLDVVIGEDQTLLVRRDSFLVLDLGLDVVDGVGALDLESYGLAG*

>peptide 4 (31 aa)
MVSELSTSRVIVLPVRVFTKICIPPLRRSTR*

>peptide 5 (29 aa)
MVSELSTSRVMVLPVRVLTKICIFSEEFGE

Sequence

>CNT30113924
AAAACACAACCTTTATTTATTATAAAACGAAAATACTAATTCCATCTGGTTCATATTCAACAAAATTAAAAGAAAACATATTTGTTTCATTTTGGTTCCC
ATCGAACCAAATTAACAGAAAACATTAAAAAACAAACTTCTTTAAAACTTCCCACCACGAAGACGGAGGACAAGGTGGAGGGTAGACTCCTTCTGGATAT
TGTAATCAGCAAGGGTGCGACCATCCTCCAACTGCTTCCCGGCAAAGATCAGACGCTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTCGCCTT
CACGTTGTCGATTGTGTCCGAGCTCTCAACCTCGAGGGTGATCGTCTTGCCAGTGAGGGTTTTCACAAAATCTGCATCCCTCCACGGAGACGGAGCACCA
GATGAAGAGTGCTTCCTTCTGTATGTTGTAGTCGGCTAGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGGTCCGGGGGAATA
CCTTCCTTGTCCTGGATCTTGGCTTTCACGTTGTCGATGGTGTCGGAGCTCTCGACCTCAAGGGTGATCGTCTTGCCGGTGAGGGTTTTCACAAAAATCT
GCATCCCTCCACTGAGACGGAGCACCAGATGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCGTCCCTCCAGCTGCTTTCCGGCGA
AGATCAAGACGCTGCTGGTTCCGGAGGAATCCCTTCCTTATCCTGGATCTTGGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCCACCTCCAGGGTGAT
CGAGTACGGTCCGGTTAGGGTTTTCACAAATATCTGCATACCACCGCGGAGCCTGAGTAACCAGATGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGC
GAGGATCAGACGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTTATG
GTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCATATTTTCAGAGGAATTCGGAGAGA