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Detailed information on CNT30113887


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535437Ficus caricaEucalyptus grandis11.2425.2184.4490forward
CNT30513856Ficus caricaJuglans regia12.4831.9585100forward
CNT30543361Ficus caricaBrassica napus10.9928.4884.0988forward

Expression of CNT30113887

Peptides detected in this lncRNA

>peptide 1 (36 aa)
LCVLLSCRQRPTRCPKCRRRRSRRRHYLCQSGSCSQ*

>peptide 2 (38 aa)
MRLSFVKLLFVCLCGRVRLINGLYKVCFLARTWAENIY*

>peptide 3 (64 aa)
VYVSSYHAAKGPRDAQNADAAAVVAAIICVSLALVANDSEHSDIQEQESGHKLGYDGPIEGPLP*

>peptide 4 (34 aa)
FMCPPIMPPKAHAMPKMPTPPQSSPPLFVSVWLL*

Sequence

>CNT30113887
GTTTATGTGTCCTCCTATCATGCCGCCAAAGGCCCACGCGATGCCCAAAATGCCGACGCCGCCGCAGTCGTCGCCGCCATTATTTGTGTCAGTCTGGCTC
TTGTAGCCAATGACAGTGAGCACAGTGACATACAAGAACAAGAGAGTGGCCACAAACTCGGCTATGATGGCCCTATAGAAGGACCACTGCCCTAGCTCCT
CCGCGTCGATGAGCGGCGCCGGCGGAGGGTCTTGGTAGTCCTTGCCCGAGTACCCTTCTTGGTGTCCTCCTTCAACGTCCTTTGCCATGATCAAAAAGAC
GACTCTTCGTAGCTAGAGAGAAGTGAAAAAAATAAGATGCGTCTTTCTTTTGTTAAGCTTCTTTTTGTGTGTTTGTGTGGAAGAGTGAGGCTCATAAATG
GTCTATATAAAGTGTGTTTTCTAGCTAGGACTTGGGCTGAAAATATTTATTAAACCTACTCTTTTGCCGACCATCCTAGTAATTACCACAAATTTATTTT
CCTTTCTATTTCTATGGCCCCACTTTTTTTGCTTGGAATTTCCTCTCTTTTTTTTTTTTTTTTTTTTTTATAGATTAGTTGGGGGTTTATATTCCAGCAA
GTTCTAATATAGTCTCTCCACAAAAGTTTGGTTTTGCCAGAAGGGCATTGGTTATTGACTACATGACTTTTTATTCACGGGTCTTGTTTTTCGCAAATTT
TGTTCACCAAAAATTACCTTCTTGAAGTTTCTTTCATTACTATTTTGTCCCCATAATTACCAAATTAACAAATTATCATTCCTTGATTATGACGAATGTT
G