Detailed information on CNT30113859


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678731Ficus caricaSetaria viridis4.3721.88875reverse complement

Expression of CNT30113859

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MLQDVKMNGYGQWKAVIDRAYNNFFEFKLVFLVSLGSCFVIIMLSLPQILCGDFLDVKYHWMGDLLLALEAHHTDRA*

>peptide 2 (42 aa)
MLNTIGWVIFYWHWKHITPTEPNTIAHMPFLCFTLHFQLNFTD

>peptide 3 (40 aa)
MVIKMIKRILTNSHRGGAFDQAAEYMIKRVRKALSNGETC*

>peptide 4 (39 aa)
QSALISPEPQNPIQISPDFWSPALSQWSSDQQESRRGGK*

>peptide 5 (33 aa)
MIQASNASAIFMRSLFSVLLLISTIRLTSFAIW*

>peptide 6 (37 aa)
MEKHVSQGQEVSLPRFEEQSSVFFLSWSIAMRCSMGR*

Sequence

>CNT30113859
CCCAGTCAGCCCTAATCTCACCGGAACCGCAAAATCCGATCCAAATCTCGCCTGATTTTTGGAGCCCAGCCCTGAGTCAATGGAGCTCTGATCAGCAAGA
GAGCAGGAGAGGGGGAAAATAAAAAAGCAGCGAAGGAGAAGAGAGAAAAAGAGAAGCACTTTTGAATGGATCTTTTACATATATAACCCAAAATTGAACC
CCCGTTACATATATGACCTTTGTTTTAATTGTTTTTTATTTTTTATTCAATTTTTAAATAAACCCCTTCACATTCACAGTTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCAGGTCGACATACATTGTTTACCTTTGGGTTTGGAATTTTGTTCTCACTTCCGGTAATCAAAGATAAATAAGTTTCTTCCCTCGCACAA
GAAGCAGCTTTATTGATTGGTGCTTGTTGACACGCCATTCCCTCCGTGCTTCTCTGAGTTCATTACATCAAAGGTATATATTAGGAGTCCTATTATATTA
CATTAAGCATTATACATTGTCACTTCAGCTTTGCCTGCACAATCGTGGCCATATCATTGACACTGAATATTTATTTGACCTTGTGGAAAAGGAAAAAGCA
TCTCACAAACATGGTAACACTCTGTATTTTAACTCTCTCCCTCTCCCTAAAATAGAAAAAACTGTGCCTTTTATAAAACGAATCTCAGTTGCCTAGCATT
TGTTACCAAGCTTGTTCCTTTATTAACTTGTTGACGTGCTCAAGTTAATTAGACTCCAGTTTATGGTTATTTTTATTAACAATATGATTCTATTGTCAGC
TTAACCAACTTTTCAGATCACTGCATCGTATCCACAATATGCCCATCGGTGAATAAAGGTCCTGATTCAGTGATAAAGTTTCTAATTCATTAAATCTGTT
AAACAAAATTATCTTGTTGTTTCATATGTGTCTGAGTAGCTAATTATAAAGCAATACTACTTGAAAATTTGAGCATAATTTTCTTTATTATTTCGAATAA
TGATTCAAGCCAGTAACGCCTCTGCTATCTTCATGAGATCCTTATTCTCAGTTTTATTACTGATATCAACTATCCGGTTGACATCCTTTGCCATATGGTA
ATAAAGATGATCAAGAGAATTTTGACCAATAGTCATCGGGGAGGAGCCTTTGATCAAGCTGCTGAATATATGATCAAAAGGGTGAGGAAAGCATTGTCAA
ATGGAGAAACATGTTAGCCAAGGACAAGAAGTTTCTCTCCCAAGATTTGAAGAACAATCTAGCGTTTTTTTTCTCTCATGGAGTATTGCAATGAGATGTT
CAATGGGTCGCTAGAAACTTCCATATTTCAGTTCACGGATTAAAGATCTTCGTCACCCAAATGCATCAAAGCCAGAGGAAGTCAAACGGCTTCCTGGTGG
AAAGATAAACAACAAGATAGAATGTTGCAAGACGTGAAAATGAACGGTTATGGACAATGGAAAGCTGTGATTGACAGAGCCTATAACAACTTTTTTGAAT
TTAAGTTAGTATTTTTGGTGTCTTTGGGGAGTTGTTTCGTTATCATAATGTTGTCTTTGCCACAGATTTTATGTGGCGATTTTTTGGATGTTAAATACCA
TTGGATGGGTGATCTTTTATTGGCATTGGAAGCACATCACACCGACAGAGCCTAATACAATTGCACATATGCCATTTTTATGTTTCACTTTGCATTTTCA
ACTTAATTTTACAGAC