« Back to Ficus carica search


Detailed information on CNT30113543


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677916Ficus caricaSetaria viridis7.625.696.2353forward
CNT30698713Ficus caricaQuercus lobata13.3422.2582.893forward
CNT30566530Ficus caricaActinidia chinensis21.8114.1180.92152forward
CNT3037087Ficus caricaCucumis melo13.9223.6682.4797forward

Expression of CNT30113543

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MYIDVISLVMFENFCKEARKGLVLRSARKVKISNAVEAADPYL

>peptide 2 (38 aa)
NCPHTNNKTMLIMVRREFQEILRITTIKVIPHRLSVVD*

>peptide 3 (94 aa)
MYKKNNYIIYVCIYIYTYVNSNFTYIPDAELGVVDDIVGHGKLNLILRRINRLNLMDDATLRPQNLTVLVRHISIEHTYRYFWSHFSLFICYYF*

Sequence

>CNT30113543
AAACTGCCCACATACAAATAACAAAACCATGCTCATAATGGTTAGACGAGAGTTCCAAGAAATATTACGTATCACCACCATTAAGGTAATTCCACATCGG
TTATCGGTTGTAGATTGAGCTGGTGGTCAGTTTATAAATGTGAGAGAAAGTCTCATCTTTTGATTTGGGTTGAAAAGGCCCAATACCACCCAACTGATAT
ATATAGGATACATATGTAGAGTCCTTATAAGACTAAACCCAACTTGTTATGTATAAGAAAAACAATTATATAATATATGTGTGTATATATATATACACAT
ATGTAAATTCAAATTTTACTTACATCCCAGATGCGGAGCTTGGAGTAGTTGATGACATAGTAGGCCATGGCAAACTGAATCTGATTCTCAGGAGGATAAA
TAGGCTGAATCTCATGGACGATGCAACCCTGAGACCTCAGAATCTGACGGTGTTGGTCAGGCACATCAGTATTGAACACACCTACAGGTACTTCTGGAGC
CATTTTAGTTTATTTATATGCTATTATTTTTGAAAGGTCTATTTGCATATATATAGATGTATATGTATGTATATAGATGTGATCTCTTTGGTGATGTTTG
AAAACTTTTGTAAAGAGGCCAGGAAGGGATTGGTTTTGAGGAGTGCAAGGAAAGTAAAGATTAGCAATGCTGTGGAAGCTGCTGATCCTTACTTACC