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Detailed information on CNT30113381


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT001365, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30550219Ficus caricaIpomoea triloba10010.2795.96446reverse complement
CNT30619000Ficus caricaSesamum indicum100.914.7394.22450reverse complement
CNT30730607Ficus caricaCorchorus capsularis100.2241.6695.08447reverse complement
CNT30632407Ficus caricaVigna unguiculata100.2216.5596.42447forward
CNT30490123Ficus caricaOlea europaea101.1225.995.34451reverse complement
CNT30505422Ficus caricaNicotiana attenuata10016.7695.96446reverse complement
CNT30712870Ficus caricaGlycine max100.2226.996.64447reverse complement
CNT3046714Ficus caricaPrunus dulcis47.0998.5989.05210forward
CNT30157615Ficus caricaPistacia vera48.8829.794.04218reverse complement
CNT3092080Ficus caricaSolanum tuberosum57.6244.0896.89257reverse complement
CNT30223394Ficus caricaHordeum vulgare44.8417.3596200reverse complement
CNT30569655Ficus caricaActinidia chinensis101.7912.7590.97454reverse complement
CNT30147386Ficus caricaMedicago truncatula101.1229.2595.79451reverse complement
CNT30435868Ficus caricaAegilops tauschii44.8414.3597200reverse complement
CNT30242786Ficus caricaAvena sativa45.0723.2196.02201reverse complement
CNT30667558Ficus caricaTriticum dicoccoides44.8417.4597.5200reverse complement
CNT30600961Ficus caricaFraxinus excelsior17.9423.3288.7580reverse complement
CNT30605266Ficus caricaGossypium raimondii10021.3196.86446reverse complement
CNT30216578Ficus caricaKalanchoe fedtschenkoi102.0213.6694.73455reverse complement
CNT30655407Ficus caricaRosa chinensis10013.3495.29446reverse complement
CNT30207637Ficus caricaHelianthus annuus10022.895.29446reverse complement
CNT30628241Ficus caricaDaucus carota10016.5296.41446forward
CNT30721940Ficus caricaTriticum spelta44.8417.2797200reverse complement
CNT30360996Ficus caricaLactuca sativa100.4530.7195.98448reverse complement
CNT30434643Ficus caricaPapaver somniferum34.320.5690.85153reverse complement
CNT30571858Ficus caricaVitis vinifera101.1213.0195.34451forward
CNT3057903Ficus caricaAmborella trichopoda10018.6190.58446forward
CNT30108930Ficus caricaOryza longistaminata44.848.5597200reverse complement
CNT3038420Ficus caricaCucumis melo101.1231.5892.02451reverse complement
CNT30331546Ficus caricaDioscorea rotundata45.2948.4493.07202forward
CNT30577866Ficus caricaOryza barthii42.8311.7292.15191forward

Expression of CNT30113381

Peptides detected in this lncRNA

>peptide 1 (72 aa)
PVFCHIRGFGPPRPIRALFNLLMARSISFGSNGKKYKIPPLKVPTPNGLSRCSHFLADPSCKRYAVRVSALY*

>peptide 2 (41 aa)
SPYFATYVGSVLQGLLELSSICSWLDRSVSGQMGRNIRFHL*

Sequence

>CNT30113381
TCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTATTAGAGCTCTCTTCAATTTGCTCATGGCTAGATCGATCAGTTTCGGGTCAAATGG
GAAGAAATATAAGATTCCACCTCTGAAAGTGCCTACACCTAATGGCTTAAGCCGCTGTTCCCATTTTCTCGCTGACCCATCATGCAAAAGGTACGCCGTT
AGAGTGAGTGCGCTTTACTAATATCAAGTAAAGGCTCTAAGCGGAGCTCCTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCTAA
ATAGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGGGTGGTCCCCCTTTCTCGCGTAAAAGCG
ATCAGAATTCGAACACGCCGCGTTTTACTGGGAAGGATCGAACCAC