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Detailed information on CNT30113367


BLAST search results

BLAST vs Swiss-Prot:
sp|P32295|ARG7_VIGRR, E-value = 6e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381249Ficus caricaManihot esculenta11.1922.8285.5376forward

Expression of CNT30113367

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MLIYILKVMWDICGLFERMVEQSFRRAKMRDKDS*

>peptide 2 (36 aa)
MVVYRFLEEELDNLSASKEKSSKDLEKNENFAIEIT*

>peptide 3 (43 aa)
MKPKQQTASFRFLQHKLQNGLLEHLLTLKLLYLCWRRTFEAIS*

Sequence

>CNT30113367
CAAAATTTAAATATTTAGATATTGATTTATCAACTACTTGCAAAGGTTTAATCATGTAGTTTAAGTAAGAGTTTTGTCTCATTTCATCAACTTCTTTTGC
AGGAAGAACTGACTTGAGAGATGAGATCAATGAAGGCGTCTTCCGTGCAGGGAATCGTTAGTCCCCCCATTGGATGATTAAATCCATATTCTTCTTCAGC
TTGAATTAGCAAATCCTGAAATAGAGGCTGGCTTAGCAATGAAACCGAAACAACAAACCGCTTCTTTTCGTTTTCTCCAACATAAACTGCAAAATGGCCT
TTTGGAACATCTGCTGACTCTGAAGCTGCTTTATTTGTGTTGGAGAAGGACCTTTGAAGCAATTTCTTAGCTGGAACCACTCGGGGAAAACGGAAACCCA
TGGTTGTGTATAGGTTTTTAGAGGAAGAACTAGATAATTTGAGTGCAAGTAAGGAGAAGAGCTCAAAGGACTTGGAGAAGAATGAAAACTTTGCTATCGA
AATAACTTAGCTTGCTGGTTTATCTGATCGATTGAATGCTTATTTATATTTTGAAGGTTATGTGGGATATCTGCGGTCTCTTTGAACGAATGGTGGAGCA
AAGCTTTCGACGGGCCAAAATGAGAGATAAGGACTCATGAAGCGATCACATGGGATTGTCTTCAAACTCTTCATTAACC