Detailed information on CNT3011305


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690174Zea maysOryza sativa26.0410.7487.588reverse complement
CNT30455311Zea maysSaccharum spontaneum27.228.2196.7492forward

Expression of CNT3011305

Peptides detected in this lncRNA

>peptide 1 (34 aa)
DGPLGKRMENSKTRVEIGWEPKYPSFTEFLVFEL*

>peptide 2 (42 aa)
MNLHGYIWCTLPTTALQIDFNKLKLFQRIDSQLPNKRIINQM*

>peptide 3 (74 aa)
TVHWGREWRIQKLGLRSVGNQSIQASPNSLYLSCEPDRCHPIPPDNIYCHVSGFVDHEPTWLHMVYSTDYRAAN*

Sequence

>CNT3011305
TGACGGTCCATTGGGGAAGAGAATGGAGAATTCAAAAACTCGGGTTGAGATCGGTTGGGAACCAAAGTATCCAAGCTTCACCGAATTCCTTGTATTTGAG
CTGTGAACCAGACAGATGCCACCCCATCCCACCGGACAATATATACTGTCACGTGAGTGGATTTGTCGATCATGAACCTACATGGCTACATATGGTGTAC
TCTACCGACTACCGCGCTGCAAATTGATTTCAACAAACTGAAATTGTTCCAGAGAATTGACAGTCAACTACCGAACAAACGAATAATCAACCAAATGTGA
ACACGTGCAGACTTGTTCTTTAGCACAGTATCCGGCAG