Detailed information on CNT30112638


BLAST search results

BLAST vs Swiss-Prot:
sp|M1BJF6|JOKA2_SOLTU, E-value = 2e-12

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30100580Ficus caricaOryza rufipogon14.3521.7382.6598forward
CNT30575237Ficus caricaOryza barthii14.3522.5382.6598forward

Expression of CNT30112638

Peptides detected in this lncRNA

>peptide 1 (56 aa)
EGIPLGNAAEIIHRLLQIVFIHAQNLLVQIDLLKTHLFKLFEEGLLENNLGVSLRR*

>peptide 2 (53 aa)
RGSHSATPQRSSTDCSRLYSFMRRISLFRSICLKPISSSSLRRASSKTIWESP*

>peptide 3 (42 aa)
MGKLSSSFLGCCTFMGLTGSANPLDGLGKSHSIFVSTFTFMG*

>peptide 4 (33 aa)
GGDPTRQRRRDHPPTAPDCIHSCAESPCSDRSA*

>peptide 5 (36 aa)
MTNQQAFIYGKIKLLISWLLHIHGLDRFCKSIRWLG*

Sequence

>CNT30112638
GGAGGGGATCCCACTCGGCAACGCCGCAGAGATCATCCACCGACTGCTCCAGATTGTATTCATTCATGCGCAGAATCTCCTTGTTCAGATCGATCTGCTT
AAAACCCATCTCTTCAAGCTCTTTGAGGAGGGCCTCCTCGAAAACAATCTGGGAGTCTCCTTGAGACGATGATGCTGCGTTAACAGCAGGAGACGGCGGT
GCTTCAATAACAGGAGATGATGGCGTTGCATTGACAACCAGAGATGGTGCAGGGCTGGTTGCAGCAGCAGGTGCAGTAGCAGGTGCAGGCTCAAACATAT
CCACAGGAGCCGAAGCAGGTGTTGGTACAGGCACAGACATAGCCGGAGCTGCCTCGGAGAACAGGTCATTGGAGGAATCCTTGGTTAAGTCAACAATGGG
ATACGACACACGTGACGTAGCCTCAGTTACTGAGGCGGAAGAGACACCATGACCAACCAGCAAGCTTTCATCTATGGGAAAATTAAGCTCCTCATTTCTT
GGCTGCTGCACATTCATGGGCTTGACCGGTTCTGCAAATCCATTAGATGGCTTGGGTAAGTCACACTCCATATTCGTATCAACATTCACATTTATGGGTT
GAGGGTGTTGGGTGCCACTGGTGAATGGAGGCAGACCCAGGCTCACTGGGATGCTCAAGGAAAATGCATTGCTCAGAGAAACA