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Detailed information on CNT30112612

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30672695	Ficus carica	Setaria viridis	26.83	78.78	80	245	forward
CNT30500458	Ficus carica	Coffea canephora	20.26	32.98	78.92	185	forward
CNT30270249	Ficus carica	Chenopodium quinoa	29.35	13.4	83.96	268	forward
CNT30287901	Ficus carica	Triticum aestivum	12.16	41.89	83.78	111	forward
CNT30224742	Ficus carica	Hordeum vulgare	12.27	47.86	82.14	112	forward
CNT30393905	Ficus carica	Triticum turgidum	15.22	42.77	80.58	139	forward
CNT30314318	Ficus carica	Camelina sativa	13.36	39.87	83.61	122	forward
CNT30216	Ficus carica	Zea mays	9.86	29.22	85.56	90	forward
CNT30229639	Ficus carica	Ananas comosus	29.13	45.24	82.71	266	forward
CNT30102429	Ficus carica	Oryza rufipogon	33.73	43.32	82.79	308	forward
CNT30115702	Ficus carica	Oryza nivara	16.98	23.27	82.58	155	forward
CNT3051367	Ficus carica	Cucumis sativus	13.03	37.07	82.35	119	forward

Expression of CNT30112612

Peptides detected in this lncRNA

>peptide 1 (94 aa)
MDDHPKGEKQLAKERSPRLVSAVDSVGDPGDHSHQVDDEESRWRDEEGRPFEHLELGKVTIFIRGLGGDSEVCDTGCEDGNKEGYEPNTRNIADL

>peptide 2 (44 aa)
MSSSSMELVLSSLAVDSTLLNIRSSDSCCERVDSNPQQGEYGSK*

Sequence

>CNT30112612
GTGGAATTTAATAAAAGATCAAAGAGTCCAAAAATGCATATAAACGTCAAGTCTGCTTAAGAAAAGTTTTAACTTGATACAAGTTACGTTTTACATATCA
GAGTTGCACTTATCTTTCAAAAAATTTAAAAGGAAAAAAAAAAAAAAAAAAGGAAATACAAAAGATGTTCTTGAAGTTTTACATGAAAATTCACCCTCTA
AAGAACAAAACAAATTCTTTTGCTTTTAAGCCACTATTTATCTGCACATAATTTAAGATTCACAAGGTAACTAATACACAAACCAGTCCACATAAATTTA
AAAATAAATAACCAAAAAAAAAAAAAAAGATTTATCAAGACAAATGCATATATAGCCTCCAACTTTAAATACGTTCTTTTCTTCTCCCCCCTTAAATATC
CAAAAAAAATAAATACTCAAAATGTCATCTTCTTCCATGGAGCTTGTACTTTCTTCTTTAGCAGTTGATTCCACATTGCTCAACATCAGGTCCAGTGACT
CTTGTTGTGAAAGGGTCGACTCTAACCCACAACAAGGAGAATATGGAAGCAAGTAGGATCGACCAAACAACGACGATTGTCGGAGTCCTGTTCTGTCGTC
CCATGAGACCTTTGAGGAAGGGGTAAAGATGGACGATCACCCAAAAGGCGAAAAACAGCTTGCCAAAGAGCGGTCCCCACGATTGGTATCCGCTGTTGAT
AGCGTAGGAGATCCCGGCGACCACTCCCACCAAGTTGATGATGAGGAGAGTCGTTGGCGGGATGAGGAGGGTCGTCCATTTGAACATTTAGAGCTCGGTA
AAGTCACCATCTTCATCAGAGGCCTTGGAGGTGACAGTGAAGTTTGTGATACCGGTTGCGAAGATGGAAATAAAGAGGGATATGAACCAAATACTCGCAA
TATTGCTGATCTG