Detailed information on CNT30112309


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SJ22|CESA9_ARATH, E-value = 8e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381526Ficus caricaManihot esculenta31.5114.7682.6598forward
CNT30629098Ficus caricaVigna unguiculata44.0535.7785.4137forward
CNT30313869Ficus caricaCamelina sativa51.7719.6683.85161forward
CNT30722091Ficus caricaTriticum spelta28.629.7684.2789forward
CNT30572236Ficus caricaVitis vinifera39.5520.7484.55123forward
CNT30706792Ficus caricaPrunus avium70.117.4582.57218forward
CNT3028112Ficus caricaTheobroma cacao35.3730.0581.82110forward

Expression of CNT30112309

Peptides detected in this lncRNA

>peptide 1 (36 aa)
FILTHMRVKIEAKRMDQTKIMVGILSCFPSKPLRKG*

>peptide 2 (56 aa)
MITQRAKKSLPKSGPHESYPLLMASEIPTTTPTMFIIKRVVGGINNDVQGYTTEFM*

Sequence

>CNT30112309
TTTATTCTCACCCACATGAGGGTTAAGATCGAAGCCAAAAGAATGGACCAGACCAAAATAATGGTGGGCATTCTGTCTTGTTTCCCAAGTAAACCTTTGA
GGAAAGGGTAGAGGTGGATGATCACCCAGAGGGCAAAGAAGAGCCTACCGAAGAGCGGACCCCATGAATCGTACCCGTTATTGATGGCATCAGAGATCCC
AACCACAACACCAACTATGTTTATTATCAAAAGGGTTGTGGGAGGGATCAATAACGATGTCCAAGGATATACAACTGAGTTTATGTAAGAGAAGCGTTCC
AACCATTTCAG