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Detailed information on CNT30112169


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671792Ficus caricaSetaria viridis4.3521.8689.0473forward
CNT30513316Ficus caricaJuglans regia8.4721.9184.51142forward
CNT30708157Ficus caricaGlycine max11.6921.8382.14196forward
CNT30290078Ficus caricaTriticum aestivum11.6925.6579.59196forward
CNT30244040Ficus caricaAvena sativa13.9530.2779.49234forward
CNT30229673Ficus caricaAnanas comosus8.3520.282.86140forward
CNT30328621Ficus caricaAsparagus officinalis7.5742.6285.04127forward
CNT30148661Ficus caricaBrachypodium distachyon8.4730.4783.1142forward

Expression of CNT30112169

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVVVGVRISCRTQTRTGPGISLGSGSGCGFGFQRSVTWWRR

>peptide 2 (83 aa)
MKWVDGYKLCNILLVVYFFWFPTIKRSSNNKYKKKDCNFVIVCRHLLQYLSQFMICVRKDHNLIIFKSFFFFFSPAWLRRRHR*

Sequence

>CNT30112169
TGTAATTTTTCTTTTTGATAATAAAAAGGAGGATTGGTGGTGTCGCACGTCCTAATCTATTAATTATTTGGAAATCTAGTGAAATCACATGTAAAATTAT
TAATTAAGATTTGACACATCCTTTCATCAACCTTAGCTCAAAGTTACGTACAGTTCACCACCTGGCCATGGTTCCCACAAGGAATTCTAAATTTAAGGCT
AAACCGTGAAAATAAGAGCGTTGGGGTTCAAACTTTGGAATACCCAGATCTGCTGTCTCATTTTTATATCTCAATTATTGTTCCCCTATTAATATTTTGA
GCTCATCAATTTGTTCAAGAATATTTGGTATTTAGCATTTTTTATGGAATAATGCTAGAGAACGTCAGTGATATTTAACATCACTCACTAATAGAGAATA
AGCCTCACAACATGGGACCCACCAGTGGAGTCCACTTCTGTATTAATGTGATTCGAACATCACTGATGTTCTAAAATATTTTTCTTTTTTTAAGAGACTA
AAGTTTAAATTCAGATAATATGACATAATACTATTGAAATGACAGTCAATGAGACAATATATCTGGACTAATAAATCTTGACTCCAGACTCTGATAGTAA
AACTTGTGGAGACCTAAGAAGGATAGCCACGACCGCTACCACTAGTGATTATATAACTATATGTTGGGCAAAATGTTCAGTCTAACTAAAAGGACAGTTT
TTGAGGGTTGGATTTTTGTCAAGTTTGGTTAAATATATATATATATATATAAATATAATATAAGATGAAGTGGGTTGATGGTTACAAATTGTGTAATATC
CTACTTGTCGTGTATTTTTTTTGGTTCCCTACCATAAAACGTTCAAGCAACAACAAGTATAAGAAGAAGGATTGTAATTTTGTTATAGTTTGTCGGCATC
TGCTGCAGTATTTGTCACAATTTATGATTTGTGTACGTAAGGACCACAATTTAATTATTTTTAAGTCTTTTTTTTTTTTTTTTTCCCCTGCATGGCTGAG
AAGAAGACACAGATGACAGAAAAAGCTCTGCCAGGTATCTGAGGACATATCTAACACAAGACGACACAATAGCAAAATAAATCACATACCAAATTGCAGC
TCTAATGGCGCCAAAAAGATCATCTTCCATGCGGATTGTTTAAGATCACTGAAGTGTATAGGATTCTCTTTAGCACAGCGTCTTGCCATGCAACGCCGGT
GAGGGCCTCAACGGCGATGGCACCAAGCGAGCCGAGCATAGCCCACCGGCCGTGAATGAGCTCGCACTCACGGAACCTCTGAATCCCAAAAACCTCCGAG
TAGGGCTGAAACGGCGTCGGATTCACGTCCGCCACCTCCACCCTCGTCCCGATCACGTCTCCGGCCACATTCTTGGCCAGGTTCTGGTCCAACGAATCCA
GCTCGTACTGCAAGTACTCCGCGGGCTTGGCGAACCCGAACGGGTCGAACCCTCGGTCGCCGACCAAGGTTCCGTCCAGCCACTCCGGAGGCTCGGCCCC
CGGGAACCACACAAGCCTCTCGCCGGACGAGAACTTGGACTGAGCCTTCTTAGATGGTGGTGGTGGGGGTGAGGATTTCTTGCCGAACCCAAACCCGAAC
CGGGCCTGGAATCTCCCTGGGTTCGGGCTCGGGTTGTGGATTCGGGTTCCAAAGAAGTGTGACATGGTGGCGGCGGC