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Detailed information on CNT30112090


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673197Ficus caricaSetaria viridis5.8122.5888.24119forward
CNT30521103Ficus caricaSetaria italica5.8120.3488.24119forward
CNT30533721Ficus caricaEucalyptus grandis11.2432.9583.04230forward
CNT30516978Ficus caricaJuglans regia14.0242.0885.02287forward
CNT30376279Ficus caricaArabidopsis thaliana6.8423.4981.43140forward
CNT30730016Ficus caricaCorchorus capsularis8.726.8985.96178forward
CNT30629841Ficus caricaVigna unguiculata5.7620.1790.68118forward
CNT30507460Ficus caricaNicotiana attenuata8.0154.1385.37164forward
CNT30710020Ficus caricaGlycine max11.4851.283.4235forward
CNT3042792Ficus caricaPrunus dulcis7.5241.7388.96154forward
CNT30635301Ficus caricaCapsicum annuum9.8250.6379.1201forward
CNT3094368Ficus caricaSolanum tuberosum8.667.9585.8176forward
CNT30182270Ficus caricaSecale cereale7.3827.3684.11151forward
CNT30294278Ficus caricaTriticum aestivum5.8127.6186.55119forward
CNT30222663Ficus caricaHordeum vulgare5.9624.1183.61122forward
CNT30560479Ficus caricaActinidia chinensis10.620.6182.49217forward
CNT3084834Ficus caricaVigna radiata7.6740.7885.99157forward
CNT30249726Ficus caricaAvena sativa8.5521.8282.29175forward
CNT3075006Ficus caricaBrassica juncea5.5225.1182.3113forward
CNT30614377Ficus caricaArabis alpina5.3742.4783.64110forward
CNT30454500Ficus caricaSaccharum spontaneum5.8132.8786.55119forward
CNT30135064Ficus caricaLolium perenne7.5226.9784.42154forward
CNT304795Ficus caricaZea mays5.8126.3387.39119forward
CNT30610860Ficus caricaGossypium raimondii4.5431.5386.0293forward
CNT30344813Ficus caricaEragrostis tef6.224.2885.83127forward
CNT30154501Ficus caricaPrunus persica14.8597.4485.86304forward
CNT30570425Ficus caricaVitis vinifera22.8126.8780.94467forward
CNT30644515Ficus caricaCannabis sativa13.0446.1986.89267forward
CNT3027985Ficus caricaTheobroma cacao14.2653.7882.19292forward
CNT3037832Ficus caricaCucumis melo8.2620.0783.43169forward
CNT30578384Ficus caricaOryza barthii6.0631.6389.52124forward
CNT30582394Ficus caricaEchinochloa crusgalli6.8437.5385140forward
CNT30557050Ficus caricaPanicum hallii5.8131.3288.24119forward
CNT30725036Ficus caricaLupinus angustifolius14.1745.0379.66290forward
CNT3049140Ficus caricaCucumis sativus8.7956.4380.56180forward

Expression of CNT30112090

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MGQAHLNTPEKWAYCSPVGREVGEVPSNQWA*

>peptide 2 (38 aa)
MLAATFPTQNKIMCKYTCRKCLVSGMICNIYNFLFINL*

>peptide 3 (73 aa)
MTPEIPPKKKPPENLAHPSAVCSWSGSFFRPVRVKDGAVDGSPSLKDATPYIDKQMLRMTTRPAAARDPAPPA*

Sequence

>CNT30112090
TCCAAACTTGAATGCCATAAAATTGAAAGTAAAATTAAACTAAATTGGAGATCCCAAACTTGATATGAATTGGTTGTGACATAATGGGTCAACATCAAAT
GTACAAATATTTTGATTTTGATTTTTTTTTATTTTGACAAAATGAGTCATAAATCATGTGAATTTAGAATAACATGCATGTTGTCTATTTGAAGAAGTAA
GGAAGGTTTAAGACATAGAGGAGGAAGTAGGCCCAAATGACGCCGGAAATTCCTCCGAAGAAGAAGCCGCCGGAGAACTTGGCCCATCCATCGGCGGTCT
GCAGCTGGTCGGGCTCCTTCTTCCGCCCGGTGAGGGTCAAAGATGGGGCAGTGGATGGGTCTCCTTCATTGAAGGATGCAACTCCATACATTGACAAGCA
AATGCTGAGGATGACAACAAGGCCAGCAGCAGCCAGGGACCCAGCTCCACCAGCATAGGGTGTGTTCCTGAGAGGCCCGGAATCCATGGGCCAGGCCCAC
CTCAATACCCCGGAGAAGTGGGCTTACTGCAGTCCTGTAGGCAGGGAGGTTGGAGAGGTACCAAGCAATCAATGGGCTTGATGTCACTGGAGTCTCCAAA
CTTCCAATGAAGGGATCTCCATTGATGGGTTGAATCACTTGGAATGTTGGCTGCAACATTTCCAACACAAAACAAAATCATGTGTAAATATACATGTAGA
AAATGTCTAGTATCCGGTATGATATGCAACATTTACAATTTTCTATTCATAAACTTATAATAACTAGTTGGATTATATAAGGCCCATTTGAGGGACATTG
AAGATGGTATTTTGAAGATTAGATTGGAAATAAATGTTTAGGGGGAAAATTTTTAAAAAATTACGTGATATAGAAAATAATATAAAAATTTGAAACGTGT
TCATAAAAAAATATGCAAAATTGATATTGTCATGTTCATTTTGTCGTAACGAGCATTTTGATCTGAAAATCTTCTTATTTTGATTTGAAATGAGAAAGTT
ATAGACTTTTAAAATTTGAGTTTTTTTAAAATGAAAGAGAAAGAATATTTGATGTATAATTGAAATTTTGAAATCAAAATAGTGTTTTATCATATCGAGA
TGGCGTTCCAAACGGATCTTTAATTTCCTATTTAAAATCTTATTATATATTATTATTCAAATATTAGTATAAAATGACAAATATCATTACAAAAATATGA
CATTTGAATTATCTGATTAATACAATATAATACAAATCACGTTATATGTTACATATAAGAGAGGTGCCGTGTTCCACCCACTTCTTTCCCTCACCGTATA
TATACTTGGAAAGAGTTTGATTCTAATAAAACGCTAATTTGTTACGGCCGGAACTTATAAAATTAATTTTTAATCAAAAGAAAAGTCCCACAAAGACGAA
TAAGACAATTAATAAGCCTCGTGAACATGTTTAACTAAAATTTGAACTCATGATGTCTGAATTTACGACTCATCTGAAAGAAAAATCTCACTGCAAGACC
ACCAATAAGGCCTGAAGTCATATAGCTTTACACACAACTATTATGAATAAGAAATTTATACGATAGGACCTTCTTATTTTTGGTTAATAGTAGAAATTGC
TTTTTATTTATTTATTTTGACAACCTTCCAAGTAAATGGAAATGTCCATGTCAAAAATTTACGACGACTTGACACAGAATTATTCCCGGTCATAAATAAC
CAACAAACCTTTTCAGATTGAACAGCCTTGACAGTGAAGGAAGAGGATCTTCTAGAAGGGAGGAGTCTGAGAGGAGAGGAAGAGAGGCCTTTGGGGGAGA
GCAGAACTGTGGAGAGAGGTGAAGAAGTGAAGTTGGACTTGAGCTGTTGGCTGGCCATTGGAGAAGTTGCAGAGGCCATGGCTTTCCTCTCTCACACCAA
AATCTGAAAAAGAATAAAACTGTTGAACAGAGATGGTATCAGAAGATGGAGTGAGATTATAGAGAGGCCTGGCCAAGTATCGTCCATTGGAAATTTTTTC
CAGAGGTTGTGGTCGTCAGTCATTCTCAGATTTCTTTGGATGATATG