Detailed information on CNT30111895


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690671Ficus caricaOryza sativa254.8291.0189forward
CNT30730495Ficus caricaCorchorus capsularis21.076.1390.6775reverse complement
CNT30502643Ficus caricaNicotiana attenuata21.075.798875reverse complement
CNT30637929Ficus caricaCapsicum annuum23.032.8792.6882reverse complement
CNT30300194Ficus caricaTriticum aestivum254.2392.1389forward
CNT3059312Ficus caricaArabidopsis lyrata2516.2495.5189forward
CNT30623007Ficus caricaDaucus carota2519.193.2689forward
CNT30153780Ficus caricaPrunus persica24.169.6195.3586forward
CNT30319059Ficus caricaAsparagus officinalis20.228.8690.2872reverse complement
CNT30150988Ficus caricaBrachypodium distachyon21.634.4189.6177forward
CNT3099667Ficus caricaOryza rufipogon253.8891.0189forward

Expression of CNT30111895

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MSMIRWFFSLVICSFCIFNFLVSLILNYFFLIKILSYLSLCLA

Sequence

>CNT30111895
GCCAAAAATTGGGATACATTCTGGGAAAATAAAACTTCCATCAAAGAGAAGCAAATGAAAGGCTTTCAATAAAATTCTCGTAGAATCGACCCCCTTGCTT
TTCTCATGTTATAATCCTCTTCCCGCAGAGCCCCCTTTTTCCTCAGTCCACAGAGACAAAATACTAAATTATAAACCGGTTCGATCAATTGAATGACTGA
ATCTTTTGCCCACTCTGAATAAGCAGCATGTCAATGATAAGATGGTTTTTTTCTCTTGTAATATGTTCCTTTTGTATATTTAATTTCCTTGTAAGCCTCA
TACTGAATTATTTCTTCCTCATCAAAATTTTATCTTATTTGAGTTTATGCTTAGCA