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Detailed information on CNT30111740


BLAST search results

BLAST vs Swiss-Prot:
sp|P69325|UBIQP_SOYBN, E-value = 8e-160

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-135

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30275114Ficus caricaChenopodium quinoa58.7897.5784.48683forward
CNT30712768Ficus caricaGlycine max59.4770.3785.09691forward
CNT30156148Ficus caricaPistacia vera57.2372.5284.66665forward
CNT3089456Ficus caricaVigna radiata59.2946.383.89689forward
CNT30510145Ficus caricaSolanum lycopersicum57.2346.784.51665forward
CNT30311067Ficus caricaCamelina sativa58.7854.0884.04683forward

Expression of CNT30111740

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MPSLSWILALTLSIVSELSTSKVMVFPVRVLTKICIPPRRRRTKWRVDSFWML*

>peptide 2 (46 aa)
MSLCWSGGMPSLSWILALTLSIVSELSTSRVMVFPVRVLTNICIPPR

>peptide 3 (52 aa)
MILQQNENISIIWEHEYDINPTTYNLVKARSRATQVIIYIYIYMSYVCVCVD*

>peptide 4 (30 aa)
MVFPVRVLTKICIPPRRRRTRCSVDSFWML*

Sequence

>CNT30111740
GCCACATGAAGTCGGAAGTAAATGAATGAGACATTCTGAACTGTTTGCTGTATATCAAGAGGCATTTTAAATGATTTTGCAGCAAAATGAAAACATAAGT
ATAATTTGGGAGCACGAATACGACATTAATCCAACTACTTATAACCTTGTAAAAGCCAGAAGCAGAGCAACACAGGTCATTATATATATATATATATATA
TGTCCTATGTGTGTGTGTGTGTGGATTAAACCAGATAGATGAACTAGAAAGAACACGTACCAAAGCATAACAACGAAAGGAAATACTGTACTTGTATTGA
GAAAGAAAAAACGCAAGTTCATTATTCACAGGCCTCGCAAGGGCCAAACTTAACCACGAAATTCAGTTCACACATATTAATAATATCCATAAGAACAAGA
AGGCAGTAACACGGCGTCAAGCCTTCAAAACAGAGCAAACATCCTTAAAAGGAAAGTCACTTAAAAGCCACCACGAAGACGGAGGACAAGGTGAAGGGTG
GACTCCTTTTGAATGTTGTAGTCGGCCAGGGTCCTTCCATCCTCAAGCTGCTTCCCAGCGAAGATAAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGT
CCTGGATCTTAGCCTTGACATTGTCAATCGTGTCAGAGCTTTCAACTTCCAAGGTAATGGTCTTTCCCGTAAGGGTCTTGACAAAGATCTGCATACCACC
ACGGAGGCGGAGGACCAAGTGGAGGGTCGACTCTTTTTGGATGTTGTAGTCAGTGAGAGTACGCCCATCCTCGAGCTGCTTTCCGGCAAATATCAACCTT
TGCTGATCTGGGGGAATTCCCTCCTTGTCCTGGATTTTAGCCTTGACATTGTCGATCGTGTCTGAGCTTTCGACCTCGAGGGTAATGGTCTTTCCTGTCA
GGGTCTTGACGAAAATCTGCATACCACCGCGGAGACGGAGAACCAGGTGTAGTGTTGACTCCTTTTGGATGTTGTAGTCGGCAAGAGTACGACCGTCCTC
GAGTTGTTTTCCAGCAAAAATGAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATCGTGTCTGAGCTTTCG
ACCTCGAGGGTAATGGTCTTTCCTGTCAGGGTCTTGACGAATATCTGCATACCACCACGGAG