« Back to Ficus carica search


Detailed information on CNT30111690


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 4e-175

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3089455Ficus caricaVigna radiata78.1271.6383.47871forward
CNT30311191Ficus caricaCamelina sativa79.0178.5282.07881forward
CNT30622898Ficus caricaDaucus carota79.1950.6384.94883forward
CNT3056329Ficus caricaAmborella trichopoda76.5973.9482.08854forward
CNT3026527Ficus caricaPopulus trichocarpa77.9488.9583.43869forward
CNT30120072Ficus caricaCitrus clementina69.1566.2983.66771forward

Expression of CNT30111690

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MVFPVRVLTKICIPPRRRRTRCSVDSFWML*

>peptide 2 (36 aa)
EKEKTQVHYSQASQGPNLTTKFSSHILIISIRTRRQ*

>peptide 3 (61 aa)
MSLCWSGGMPSLSWILALTLSIVSELSTSRVMVFPVRVLTNICIPPRRRRTKWRVDSFWML*

>peptide 4 (53 aa)
MPSLSWILALTLSIVSELSTSKVMVFPVRVLTKICIPPRRRRTKWRVDSFWML*

Sequence

>CNT30111690
TTGAGAAAGAAAAAACGCAAGTTCATTATTCACAGGCCTCGCAAGGGCCAAACTTAACCACGAAATTCAGTTCACACATATTAATAATATCCATAAGAAC
AAGAAGGCAGTAACACGGCGTCAAGCCTTCAAAACAGAGCAAACATCCTTAAAAGGAAAGTCACTTAAAAGCCACCACGAAGACGGAGGACAAGGTGAAG
GGTGGACTCCTTCTGAATGTTGTAATCAGCCAAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCGGCCAGGGTCCTTCCATCCTCAAGCTGCTTCCC
AGCGAAGATAAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATCGTGTCAGAGCTTTCAACTTCCAAGGTA
ATGGTCTTTCCCGTAAGGGTCTTGACAAAGATCTGCATACCACCACGGAGGCGGAGGACCAAGTGGAGGGTCGACTCTTTTTGGATGTTGTAGTCAGTGA
GAGTACGCCCATCCTCGAGCTGCTTTCCGGCAAATATCAACCTTTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGGATTTTAGCCTTGACATTGTCGAT
CGTGTCTGAGCTTTCGACCTCGAGGGTAATGGTCTTTCCTGTCAGGGTCTTGACGAAAATCTGCATACCACCGCGGAGACGGAGAACCAGGTGTAGTGTT
GACTCCTTTTGGATGTTGTAGTCGGCAAGAGTACGACCGTCCTCGAGTTGTTTTCCAGCAAAAATGAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGT
CCTGGATCTTAGCCTTGACATTATCGATCGTGTCTGAGCTTTCGACCTCGAGGGTAATGGTCTTTCCTGTCAGGGTCTTGACGAATATCTGCATACCACC
ACGGAGGCGGAGGACCAAGTGGAGGGTCGACTCTTTTTGGATGTTGTAGTCAGCGAGAGTACGACCGTCCTCAAGCTGCTTTCCGGCAAAGATCAACCTT
TGTTGATCTGGGGGAATTCCCTCCTTGTCCTGAATTTTAGCCTTGACAATGTCAATGGTATCTGAACTCTCGACCTCAAGAGTGATGGTCTTTCCGGTAA
GGGTTTTCACGAAGA