« Back to Ficus carica search


Detailed information on CNT30111644


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG85|UBI1P_NICSY, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641270Ficus caricaNymphaea colorata79.9357.0482.441139forward
CNT30532296Ficus caricaEucalyptus grandis84.1481.5681.731199forward
CNT30701594Ficus caricaQuercus lobata61.8285.8783.54881forward
CNT30274489Ficus caricaChenopodium quinoa63.373.6983.92902forward
CNT3019984Ficus caricaCitrullus lanatus63.9360.0582.44911forward
CNT30401729Ficus caricaBeta vulgaris78.0481.1782.371112forward
CNT30169882Ficus caricaPistacia vera79.9355.2181.831139forward
CNT30635990Ficus caricaCapsicum annuum78.654.0383.571120forward
CNT3094992Ficus caricaSolanum tuberosum64.9879.5584.99926forward
CNT30568725Ficus caricaActinidia chinensis77.8995.6981.351110forward
CNT30538027Ficus caricaBrassica napus86.4664.9881.741232forward
CNT30238962Ficus caricaBrassica oleracea60.9844.9683.43869forward
CNT30511508Ficus caricaSolanum lycopersicum77.6184.5681.461106forward
CNT30145352Ficus caricaMedicago truncatula85.1260.9584.011213forward
CNT30311152Ficus caricaCamelina sativa77.8268.7582.331109forward
CNT3079055Ficus caricaBrassica juncea68.1489.6684.55971forward
CNT30264722Ficus caricaBrassica rapa62.3283.9382.88888forward
CNT30608559Ficus caricaGossypium raimondii79.9374.64821139forward
CNT30229013Ficus caricaAnanas comosus79.0971.4682.171127forward
CNT30217449Ficus caricaKalanchoe fedtschenkoi79.9375.4882.621139forward
CNT30716337Ficus caricaMalus domestica golden75.3786.6883.431074forward
CNT30623426Ficus caricaDaucus carota78.6762.2184.121121forward
CNT30418420Ficus caricaPapaver somniferum77.8264.5181.511109forward
CNT30704854Ficus caricaPrunus avium86.4669.184.741232forward
CNT3028051Ficus caricaTheobroma cacao79.392.781.681130forward
CNT30120507Ficus caricaCitrus clementina6483.8282.35912forward
CNT30595410Ficus caricaEragrostis curvula78.6782.1881.711121forward
CNT30334105Ficus caricaCynara cardunculus86.4652.2581.331232forward
CNT30724005Ficus caricaLupinus angustifolius55.2360.9684.37787forward
CNT3050995Ficus caricaCucumis sativus75.8697.1284.091081forward
CNT30114931Ficus caricaEutrema salsugineum62.1879.8984.09886forward

Expression of CNT30111644

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MSLCWSGGMPSLSWILALTLSIVSELSTSRVMVFPVRVLTNICIPPRRRRTKWRVDSFWML*

>peptide 2 (30 aa)
MVFPVRVLTKICIPPRRRRTRCSVDSFWML*

>peptide 3 (53 aa)
MPSLSWILALTLSIVSELSTSKVMVFPVRVLTKICIPPRRRRTKWRVDSFWML*

>peptide 4 (44 aa)
ERKYCTCIEKEKTQVHYSQASQGPNLTTKFSSHILIISIRTRRQ*

Sequence

>CNT30111644
GAAAGGAAATACTGTACTTGTATTGAGAAAGAAAAAACGCAAGTTCATTATTCACAGGCCTCGCAAGGGCCAAACTTAACCACGAAATTCAGTTCACACA
TATTAATAATATCCATAAGAACAAGAAGGCAGTAACACGGCGTCAAGCCTTCAAAACAGAGCAAACATCCTTAAAAGGAAAGTCACTTAAAAGCCACCAC
GAAGACGGAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAAAGTCCTTCCATCCTCCAACTGCTTCCCTGCAAAAATCAACCTCTG
CTGGTCTGGCGGGATGCCCTCCTTGTCCTGAATTTTCGCCTTCACATTGTCGACAGTGTCCGAGCTCTCCACCTCCAAGGTGATCGTCTTCCCAGTCAAG
GTCTTCACGAAGATCTGCATGCCACCCCTCAGGCGCAGCACAAGGTGAAGGGTCGATTCCTTCTGGATGTTATAATCCGCAAGAGTCCTACCATCTTCGA
GCTGTTTCCCAGCGAAAATCAGCCGCTGCTGGTCAGGGGGGATTCCCTCCTTGTCTTGAATCTTTGCCTTGACGTTATCAATCGTGTCTGAGCTCTCCAC
CTCAAGGGTGATGGTCTTTCCTGTAAGCGTCTTGACAAAAATCTGCATTCCACCACGGAGACGAAGGACAAGGTGAAGGGTGGACTCCTTTTGAATGTTG
TAGTCGGCCAGGGTCCTTCCATCCTCAAGCTGCTTCCCAGCGAAGATAAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTGA
CATTGTCAATCGTGTCAGAGCTTTCAACTTCCAAGGTAATGGTCTTTCCCGTAAGGGTCTTGACAAAGATCTGCATACCACCACGGAGGCGGAGGACCAA
GTGGAGGGTCGACTCTTTTTGGATGTTGTAGTCAGTGAGAGTACGCCCATCCTCGAGCTGCTTTCCGGCAAATATCAACCTTTGCTGATCTGGGGGAATT
CCCTCCTTGTCCTGGATTTTAGCCTTGACATTGTCGATCGTGTCTGAGCTTTCGACCTCGAGGGTAATGGTCTTTCCTGTCAGGGTCTTGACGAAAATCT
GCATACCACCGCGGAGACGGAGAACCAGGTGTAGTGTTGACTCCTTTTGGATGTTGTAGTCGGCAAGAGTACGACCGTCCTCGAGTTGTTTTCCAGCAAA
AATGAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTATCGATCGTGTCTGAGCTTTCGACCTCGAGGGTAATGGTC
TTTCCTGTCAGGGTCTTGACGAATATCTGCATACCACCACGGAGGCGGAGGACCAAGTGGAGGGTCGACTCTTTTTGGATGTTGTAGTCAGCGAGAGTAC
GACCGTCCTCAAGCTGCTTTCCGGC