CANTATAdb - search

Detailed information on CNT3011155

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FLP9|GGAP2_ARATH, E-value = 2e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30524173	Zea mays	Setaria italica	22.43	13.12	93.02	129	forward
CNT30651855	Zea mays	Rosa chinensis	20.7	33.06	82.35	119	forward
CNT30367441	Zea mays	Sorghum bicolor	22.43	16.62	93.8	129	forward
CNT30557237	Zea mays	Panicum hallii	29.91	13.79	92.44	172	forward

Expression of CNT3011155

Peptides detected in this lncRNA

>peptide 1 (75 aa)
SEIYLGEQENPLATVRNEHIVRHIVVLQPNASIRNHSGQASHRIIYQLGHGHPILLRVLREWDLVGSCLLNRERH*

>peptide 2 (30 aa)
MGYLPRLPFAVQARSSLDQSSEAGGPEHEE*

Sequence

>CNT3011155
TCAGAAATTTACCTGGGGGAACAGGAAAACCCTCTTGCCACAGTCAGAAATGAGCACATTGTAAGGCACATTGTTGTCTTGCAGCCAAATGCAAGCATTA
GAAACCACAGTGGCCAGGCCTCTCACAGGATAATTTATCAGCTTGGACACGGTCACCCCATTCTTCTTCGTGTCCTCAGAGAGTGGGATCTTGTGGGTAG
CTGCCTTCTCAACAGGGAAAGGCACTGACAAGTAGTACGCCTTTAAAGAAGAAAAGATAATATAATTCAGTACTAAGCAACATTTTTAAAACAAAAGTTA
CCACAACACTATCTGCACAATACTGAATATGCTCCTGTTTGGTTGGGATTTTGTGGTGAGAAGTAAATTTAGATACCATCAAAAGTTTAATACCTGAAAG
TGGAGGTGATTGATGGTGGCAAACGCACCCAAGCTATTGTAACCAAGCCTGAAGTATGGGCTACCTCCCTCGGCTGCCATTTGCAGTGCAAGCAAGAAGC
TCTCTGGATCAATCCTCTGAGGCAGGCGGTCCAGAACACGAGGAATGAGAAGCACATGTCCATATTCAATTGGGC