Detailed information on CNT30111334


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002550, E-value = 3e-156

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552265Oryza longistaminataOryza glaberrima88.7346.8897.34488forward
CNT30574820Oryza longistaminataOryza barthii85.8249.3793.43472forward
CNT30115748Oryza longistaminataOryza nivara75.4550.2495.18415forward

Expression of CNT30111334

Peptides detected in this lncRNA

>peptide 1 (29 aa)
ANAAPRARRRRRCRCSSPLPPTPVISSLS*

>peptide 2 (31 aa)
MCLTVCEHGVCESENYVFWCWCVLEMKICLMY

>peptide 3 (35 aa)
MGEDMADDFRTLEEEEEYRTITAMRFKTEDDGFKL*

>peptide 4 (57 aa)
QRRPPRPSPPPLQVLIAPAADSCDFIAVVEANSLWVKIWLTISGPLRRKRSIVRLLL*

Sequence

>CNT30111334
GCCAACGCCGCCCCCCGCGCCCGTCGCCGCCGCCGCTGCAGGTGCTCATCGCCCCTGCCGCCGACTCCTGTGATTTCATCGCTGTCGTAGAGGCAAACTC
TTTATGGGTGAAGATATGGCTGACGATTTCAGGACCCTTGAGGAGGAAGAGGAGTATCGTACGATTACTGCTATGAGATTCAAGACTGAGGATGACGGCT
TCAAGTTATAGGCCATTACATTTTGCAATCATGTCTCAAAGTTGTTTTGTCATTCCTACAATTTCAGGAAAGTAGAAGAAGATGTGTGAGATGGATAAGA
AGTAGAAGCAGCCCTTTGCTATGCACTTTACATAGTTTTGTCATGCTCTTGGTCGTAATGAATACATTGGACTGTAATGAATCTTTGATGTGCTTTCCTG
TAGTATGATGGATGTCCTGCTATTTTGAGTTGTGCTCGCATGGTTGAATTTTGATGTGTTTAACTGTATGTGAACATGGTGTATGCGAATCTGAAAATTA
TGTGTTTTGGTGCTGGTGCGTTCTGGAAATGAAGATATGTTTGATGTATT