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Detailed information on CNT30111182


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555574Oryza longistaminataOryza glaberrima73.9164.5991.06425forward
CNT30104723Oryza longistaminataOryza rufipogon70.2655.0499.5404forward
CNT30578574Oryza longistaminataOryza barthii37.3951.8192.09215forward

Expression of CNT30111182

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MYTTLFVLDQKENFISTNSHCPTPINTDA*

Sequence

>CNT30111182
CCCCGTACATTTCCCTTAATGTGAAAAATTTATTCATTCACCTGGATTGAAAAGCTCAGCTGGTGCGGTTGGTAAGTACTACTACATCATTTTGTGTTTA
AAAGCTTAGTAAATCAGACATTTTGGTTCCTTAGCCGGCAAGAAAGTTGATGTTTATTTGAGTGATTTCAAAGGTTCTTCCCAGCTCCCTACACATGAAG
TTGTCTTGGAAGTTGGAACCACTGATGCTCTATTTAAGGCTGACTTAGTTAAGGAGAAAACGATGAAAGCTTCAGCTAATTAATCAGCTCCTAAATTCTG
AGCACATATAAAGCCAACCCACACTATGGTTACCGAAGTTTCGAAATTTTAAGGTTCCGTTGTTTTTCCAATGTATACCACATTATTTGTATTGGACCAG
AAAGAAAATTTCATTTCCACAAATAGTCATTGTCCGACTCCAATTAACACCGATGCCTGAATATCCCAGACAATTAGTGTATGAACTCTGAAATTGGGTA
TGAGTTCTGAGGTGTATATCTTCCTCTGAATTTTTTCCTCCACTTGTAATTTATAGATTATACTTCTAACAGTGA