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Detailed information on CNT30111180


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001230, E-value = 2e-162

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697509Oryza longistaminataOryza sativa22.0113.6986.0879forward
CNT30555880Oryza longistaminataOryza glaberrima38.4418.04100138forward
CNT30578100Oryza longistaminataOryza barthii38.4417100138forward
CNT30117968Oryza longistaminataOryza nivara38.7213.6594.24139forward

Expression of CNT30111180

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MSGDEIITVFMISPCFISNVLHIIMPINLTGKTIMELI*

>peptide 2 (29 aa)
MGPVDEPNIELSPNALAVICQAMKSLRYL*

Sequence

>CNT30111180
GGGAATTGGCCCAAGGAATTCAGACACTACTATAGTACTAACATAGACATGGTGGCGCTGCCTTGCGTTTAGTTGATGGGTCCAGTGGATGAGCCAAATA
TTGAACTTTCTCCTAATGCTCTTGCAGTAATATGTCAGGCGATGAAATCATTACGGTATTTATGATCTCACCATGTTTTATATCTAATGTTTTGCATATA
ATAATGCCCATCAACTTGACAGGTAAAACCATAATGGAGCTGATTTGAAAAGAAAACTACTGACGACGAGGCGACGAGGATGGATAGATGGATCAACTTT
AAAAATAAATGAGATGTGCGTGAAACATCTCGTTCTTTTGGTGATGTCCTGAAACGAGG