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Detailed information on CNT30111140


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8H016|LOX6_ORYSJ, E-value = 5e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691915Oryza longistaminataOryza sativa27.2893.8891.74230reverse complement
CNT30136376Oryza longistaminataLolium perenne10.3229.1997.787forward

Expression of CNT30111140

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MSSSAGPGVRSPQSPNSGEGCGTGEVEKRGFGFVWVRILHLP*

>peptide 2 (58 aa)
MNGSAMSPDQMEMLLGTPRQVTPGGELGASSSYGSTPAPHRFFRPWSALRLSMVSSARR

>peptide 3 (43 aa)
MLKSPFCSRSYTLTIFFLFYRTFTIAIIIGEVVTTTGSDPVVS*

>peptide 4 (48 aa)
VAKNTYIKKFIQKLLIVYKYTVISQTMEPSNAVRSPNNLQVLQTISTP*

Sequence

>CNT30111140
GGTCGCTAAGAATACATATATAAAAAAATTTATTCAAAAATTACTTATTGTTTACAAATATACCGTTATAAGCCAAACAATGGAGCCGTCAAATGCGGTA
AGATCTCCAAACAACCTGCAGGTGTTGCAAACGATTTCGACGCCGTGACGCCTTGAGATGTTCAGCAACTACGAGGTATGACTATGAGCATGCAAAGTTC
AGTGGCGCAGAGCATAATTGCAAGATCAGTAAGGCATTGCCTTCACCTCAACATTGCAAACTGAATAGATGCTGAAAAGCCCATTTTGCTCTCGCTCTTA
CACTCTCACAATCTTCTTCCTTTTTTACAGAACATTCACAATTGCTATCATCATCGGAGAAGTCGTCACCACAACTGGTAGCGATCCTGTTGTTTCCTAA
CATGGTCCCTGAATGGTGGTGAGGTGATCGTCGCCGGCGAGCAGTAGAGCAGAGGCGGGGACAAGGCTGCGTAGGATGTCGTCGTCGGCGGGTCCCGGAG
TTCGGAGTCCCCAGTCGCCGAACTCCGGCGAGGGTTGCGGCACTGGAGAGGTGGAGAAGCGAGGATTTGGTTTCGTTTGGGTACGGATACTACATTTGCC
CTGATTAATACTCCTATTTCGTATTCATTTTACTAAAATTATTGATCCAGAACACAGAGAGAGGAATGAATGGATCGGCAATGTCGCCGGATCAGATGGA
GATGCTGTTGGGCACGCCGCGGCAGGTGACCCCCGGCGGCGAGCTGGGCGCCAGCAGCTCGTACGGCAGCACCCCGGCGCCGCACCGGTTCTTCCGGCCG
TGGTCGGCGTTGCGCCTCTCGATGGTCTCCTCGGCGCGTCGCA