« Back to Oryza longistaminata search


Detailed information on CNT30111004


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30102244Oryza longistaminataOryza rufipogon32.4363.1896.95393reverse complement

Expression of CNT30111004

Peptides detected in this lncRNA

>peptide 1 (49 aa)
PPPPPPSPSPASAAASRSNRNRIHHHPNLLLLPPAAARSGVLTCCCLLF*

>peptide 2 (89 aa)
GRRLLLQAQARRPRQPQEVTAIESIITRICYYYRPPPLAPVCLLAAACCFELLLLCHDVPRDRRVDLRTYNTYVTVFRRVFIGMFSYDV*

>peptide 3 (29 aa)
MDLPMQRCADTRHYRLLTCQKKSQQVLCI*

Sequence

>CNT30111004
GGCCGCCGCCTCCTCCTCCAAGCCCAAGCCCGGCGTCCGCGGCAGCCTCAAGAAGTAACCGCAATCGAATCCATCATCACCCGAATCTGCTACTACTACC
GCCCGCCGCCGCTCGCTCCGGTGTGCTTACTTGCTGCTGCTTGCTGTTTTGAATTATTATTACTGTGTCATGATGTGCCGCGTGATAGACGCGTTGATTT
GCGCACATATAATACATATGTGACTGTGTTTCGTCGCGTCTTCATCGGCATGTTTAGCTATGATGTTTAGTTTATGTGTCACTACTCTATGATGCTGTCA
ATGGTGTCAATGGATGATAATGTTTATGTCTGTCACTGCTCAAACAATTGCTAAATCTGAGTAAAGAAAAAGGTGATGGCTAAATCTGTTTGCTCACTCA
CTTCCGTTTCTTAGCAAGGATGAATTGGAAATTTGCAATTGTGATTAACTGATTATTATCATTGCGGTGTCGAGCGGCATCTTTTTTACCTTGGTGATCA
TAGGTATCATGTGGGGCATGTTATTCTGCGGTGAACCCATGACTGATCTGCTTTTAGCAATGGAAGCACAGTAATTAGGAGATTCTATCTGTTTAGAAAA
CAGATGTTTTGATTTCGTAGTTATGCGCCTGAAAAACGATTGCCTCTTCACAATTAGAGGTAATTGCAACATGGAACTGAGGAACAATGGGCCTGTTTAA
TGGAGTTAGTTGCGGATTGATGAAATCGTGGTTCGAACACTTCTTTCAGCACTGAATTTTAGATGCACACCTCACACGGTTCAGTTTTCCTAATGTTAGG
ACTAGTGAACTCCTTAATCTCCGATATGATCTGTTAAACATGCAGATGGCTCTATGCCAAGCCCTTCACAGTGAGAAGTTGCATCATTTGTTTCATGTGA
TTTCCACTATTCGTAGGTAGTTCATTACGGTTATTATTTTGTCATCTGAGCATGGATTTACCAATGCAGCGGTGTGCAGATACAAGGCATTACAGGCTTC
TAACTTGTCAGAAAAAAAGTCAACAAGTTTTGTGTATTTGATTGGTACCTAGACTAAACTACCATTGAGGCTTAACACCATAAACTGATGTTTTGCATTA
CTTTATAGCAGCGAGATGCCTTTCTAAGGCTCATGGACTTTAGTTAGTGCAGTGCCCACTGGGGAGGCATTGCAATGATGTGATATTATGGTGCTTGAAG
CATGGGGGAGGC