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Detailed information on CNT30110940


BLAST search results

BLAST vs Swiss-Prot:
sp|P69322|UBIQP_PEA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-166

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693916Oryza longistaminataOryza sativa48.1287.4196.931305forward
CNT30674319Oryza longistaminataSetaria viridis30.3182.4587.59822forward
CNT30641270Oryza longistaminataNymphaea colorata41.3356.1383.051121forward
CNT30528977Oryza longistaminataEucalyptus grandis33.2667.3185.37902forward
CNT30191758Oryza longistaminataSecale cereale39.670.5286.411074forward
CNT30306465Oryza longistaminataTriticum aestivum24.2672.4788.6658forward
CNT30226205Oryza longistaminataHordeum vulgare35.7393.985.66969forward
CNT30553681Oryza longistaminataOryza glaberrima32.380.9695.21876forward
CNT30242826Oryza longistaminataAvena sativa33.2272.0888.35901forward
CNT30669573Oryza longistaminataTriticum dicoccoides24.4167.4889.12662forward
CNT30461176Oryza longistaminataSaccharum spontaneum32.5625.986.75883forward
CNT30141342Oryza longistaminataLolium perenne42.3788.8687.121149forward
CNT307928Oryza longistaminataZea mays33.8577.0186.49918forward
CNT30229013Oryza longistaminataAnanas comosus41.7471.7884.191132forward
CNT3067522Oryza longistaminataLeersia perrieri33.2672.9884.81902forward
CNT30653057Oryza longistaminataRosa chinensis33.1567.9584.32899forward
CNT30716337Oryza longistaminataMalus domestica golden38.6884.6784.561049forward
CNT30623044Oryza longistaminataDaucus carota41.4857.0582.491125forward
CNT30685426Oryza longistaminataTriticum urartu41.8948.7387.941136forward
CNT30722465Oryza longistaminataTriticum spelta30.6873.6988.82832forward
CNT30348745Oryza longistaminataEragrostis tef40.8999.8285.121109forward
CNT30368619Oryza longistaminataSorghum bicolor33.3778.4285.64905forward
CNT30596296Oryza longistaminataOryza meridionalis50.1198.6996.911359forward
CNT30370352Oryza longistaminataOryza glumipatula36.6984.0491.16995forward
CNT30704854Oryza longistaminataPrunus avium41.5663.2182.791127forward
CNT30150301Oryza longistaminataBrachypodium distachyon24.3746.8188.8661forward
CNT30576485Oryza longistaminataOryza barthii28.2882.392.31767forward
CNT30116770Oryza longistaminataOryza nivara45.7288.796.771240forward
CNT30593897Oryza longistaminataEragrostis curvula33.0479.7986.83896forward
CNT30604148Oryza longistaminataOryza punctata31.1910089.6846forward
CNT30174646Oryza longistaminataVigna angularis30.679.6585.06830forward
CNT3050995Oryza longistaminataCucumis sativus38.6894.2583.411049forward

Expression of CNT30110940

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MTQQMFEQQYSTFKRTRWSTTKLRQTAQTA*

>peptide 2 (48 aa)
MKGGLLLDVVVGEGSAVLQLLASKNKTLLVWGNALLVLDLRLDVVDRV*

>peptide 3 (52 aa)
MRRCWSGGIPSLSWILAFTLSMVSEDSTSRVMVLPVRVFTKICICKNVYQPW*

>peptide 4 (52 aa)
MSLCWSGGMPSLSWIFAFTLSMVSELSTSRVIVLPVSVLTKICIPPLRRRTR*

>peptide 5 (70 aa)
MDQQISAKDMEATGHEHQEFNQHTNSIKFVMAKYKSISWISRDDQDHTIIRKQYTEPQLILTSKISARLP*

>peptide 6 (40 aa)
MVSEDSTSRVIVLPVKVLTKICMPPRRRRTRWRVDSFWML*

>peptide 7 (37 aa)
MVSELSTSRVMVLPVRVLTKICIPPLRRSTKCRVDSF*

>peptide 8 (37 aa)
MIKITRSSGNNTQSHNLYSQVKLAHDYHEHGTTGQAK*

>peptide 9 (35 aa)
MVSLQYIQDYKGTRIKQTNVNKKKKESSKHQTTKN*

>peptide 10 (44 aa)
MPSLSWIFALTLSIVSDDSTSSVMVLPVRVFTKICIPPLRRRTR*

>peptide 11 (40 aa)
MVHYETKADGTNSINKVFMRITRTQDNSTAAIPSIITDHP*

Sequence

>CNT30110940
GATTTTGATGAGGAAATCTGAACTCGTCAAAACTCAAAAGCAATGATCTGAATACTAAACATTGCATTTTCTTTCATGTTTTTCAGCTGTAAAACTATAT
AGGCTTAGAGAGCTCCAGCATGATCAAAGACATGAAGTTGCAGTTCTAGCATTCAAAGAACGCGATTGTGTAAATACACGGGAAAATGACGGAACCATTA
AACATATCTTGCCCGTTCTAAAAAAATTGAGTCACTTATCCCTAAAGTTTGCTTTGTGCAATCATCCCCCGTAAACACCCTCCCAGAAAACGCCCTGATC
ATTTGAGGGCTTCAAAGTCCAAACGATCCATTAGCTGATTAGCATGACAAGAATCTGCAATTGTTTCACTCCAGTGTACTCAATAAAATGACTTATATCA
CTCCAATCTAGTCAATAAAATAAATCAGAGGCACTTTAATCTGAAACATAGGCGAATTTGAATCAAGAGTTGTAATGGGTGCAGAAATATAAGCAAATCA
AGAGTTGTAATGGGTGTGTTTAGTTCCTGAAAAAAGTTGGAAGTTTGAAGAAAGTTAGGAGTTAAGAAAAAAAGTTGGAAGTTTATGGGTGTAGAAAAGT
TTTTGATGTGATATGATGTGATGGAAAGAAGGGAATAGGGTAGAAACTAAACACGGCCTTATTAATTAGGTTAAACTGCTATGACCCAGCAAATGTTCGA
ACAGCAGTACAGCACATTTAAACGGACTCGATGGTCCACTACGAAACTAAGGCAGACGGCACAAACAGCATAAACAAAGTTTTCATGAGGATAACGCGGA
CACAGGATAATAGTACAGCAGCAATTCCATCAATTATTACTGACCACCCCTAAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCG
GCGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTATCCTGGATCTTAGCCTTCACATTGT
CGATGGTGTCGGAGCTCTCAACCTCCAGAGTAATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCATACCACCCCTGAGGCGGAGCACCAAGTGTAG
GGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGTCTCTGCTGGTCTGGGGGGATGCCCTCC
TTATCCTGGATCTTCGCCTTCACGTTATCAATGGTGTCCGAGCTCTCAACCTCAAGGGTAATAGTCTTGCCAGTGAGTGTCTTGACAAAAATCTGCATTC
CACCCCTTAGGCGCAGAACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCTGCCGTCCTCCAGCTGCTTGCCAGCAAAAATAAG
ACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATCGTGTCTGATGACTCGACCTCAAGCGTAATGGTCTTGCCA
GTAAGGGTCTTCACGAAGATCTGCATTCCTCCCCTGAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTACCAT
CCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATCCCCTCCTTGTCCTGGATCTTTGCCTTAACGTTGTCAATGGTATCAGAAGA
CTCAACCTCAAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCATGCCTCCCCGGAGGCGGAGGACAAGGTGGAGGGTGGATTCCTTCTGG
ATGTTGTAGTCAGCAAGCGTGCGCCCATCTTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGG
CCTTTACATTGTCAATGGTATCCGAGGACTCAACCTCAAGGGTTATGGTCTTGCCAGTGAGAGTCTTCACAAAGATCTGCATCTGCAAGAATGTATATCA
ACCATGGTAAGTCTCCAGTATATACAAGATTATAAGGGAACCAGGATCAAGCAAACAAATGTTAACAAAAAAAAAAAAGAATCTTCTAAGCACCAAACTA
CAAAAAATTAACAGATAACAGAAGGTTGCAGTTAATGTCAAAGGTAGTAATGGCTGTTCTGTACTTCTGTAGATTAGATTACAAAAAGCATAAAAAAGAT
AAACAGTAGAGCATATTTTTGATCTAACTCAGGGGAACCACTATAAGTGCCACATGCAAATCTGACAAAGCTAGTTTGGGTGCTTCACAGGATCATGAAG
AACTCTAATTCCAATCATGTTACTGCAACCTGACTAAATTGAATTATGTGAACTCAAACAATGCGCACCTATAAAAATATAAGTATGCTAGGGATGTAGG
GCATAATTAAGCTTGTACATCATGGATCAGCAGATAAGTGCAAAGGATATGGAGGCCACAGGGCACGAGCATCAGGAATTCAATCAACACACGAACAGTA
TCAAGTTTGTTATGGCAAAATATAAGAGTATTTCATGGATCAGCAGAGATGATCAAGATCACACGATCATCAGGAAACAATACACAGAGCCACAACTTAT
ACTCACAAGTAAAATTAGCGCACGATTACCATGAGCACGGGACAACCGGGCAAGCCAAATAAATCATGATATAACAACAGATCTACACAAAATAATATTA
ACTACGGAACTA