« Back to Oryza longistaminata search


Detailed information on CNT30110898


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000427, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30370799Oryza longistaminataOryza glumipatula55.39100.9389.62761forward
CNT30550878Oryza longistaminataOryza brachyantha15.4321.0182.55212forward

Expression of CNT30110898

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MCESSLPGSARTPLTARNRVRLECMRTQVHGAGTAKVRLLKGFAVASLIRWDVGSCVGQVAEYG*

>peptide 2 (30 aa)
MIFENSALRKVTIATPCIILYITAFCVVAC*

>peptide 3 (42 aa)
MIGVRFHSRSRSPVDCLWHVNRALVLFCLPLLFSDSCWPAWP*

>peptide 4 (36 aa)
MGQPLVGPRGAGAYSGVAIGRTAMCKPKLNYNLMHV*

Sequence

>CNT30110898
TGAGTCCTTAGTCAATTATGACAAAAGCTTAGTAATGCTATTTTAGAATCATGCATTCTCATATTTATCAAATGCTATATGCTTGGGCAACTACCTTAGA
GAAGGTAGTTGAGATTCGGCATGTGGAGACATGAGCGCCACATTGCCATGACATTGGTGACATGATTTGTGAAAGGAAAAAAATGAAACTAAACAACTGT
TTTTGACTGGGGCGGCTGGAGGACTTGGGTGGTGTCCGGTAAAGGCTAGTGCCGTCCCTGGTCAATTAAGGACCGAGCCATGAAGTTAAGCATGAAACGA
CCCCCGTACAACCGCACTTCTCGTATGGGTATAGACCTAGCGGAGTAAATAGCCGAGCGGAGGCAGTATCCCTGCATAGTGGTTTTCTTGATGTGTGTGA
GGCAGGGCCTACGATGGGGCAGCCATTGGTAGGACCGCGAGGGGCGGGTGCCTACAGTGGTGTCGCCATCGGTAGGACTGCCATGTGTAAACCTAAACTT
AACTATAACTTAATGCATGTGTGAGTCTTCCCTTCCCGGGAGCGCCAGAACTCCTCTCACTGCTAGAAACCGTGTACGCCTAGAGTGCATGAGGACTCAA
GTTCATGGAGCGGGTACTGCCAAAGTGAGGTTGTTGAAAGGCTTTGCCGTGGCAAGTCTCATTCGTTGGGACGTAGGCTCATGTGTTGGGCAAGTCGCGG
AGTACGGGTAAAGTGTACATCCACTGCAGTGTGAGTAAACCAAATCTATTCGAATAGCCGTGCTCGCGGTTATTGAGCACCGGGACATGTATTACACTTG
GCTAGACTCTAAATTCTTAAAATGATGGGTGGGATGTTGCATGATGATTTTGTACTGGTGGATCAACTTCTCGAGAGGCGAGAAGGGGTAGACCCCAGAA
AACCATGACGACCAGTGGCGGGAAGCTATCCTTGGGAACACAATGGATGGTGGACAGAACCGTCGCTGTTTAATGAACAATGGAATTAAAACTTGACCAG
TTTATGCTAGGTCTTAGGTTTGTGAAATGATATTTGAAAACTCAGCTTTACGCAAAGTAACCATAGCCACTCCTTGTATTATCCTGTACATTACTGCATT
TTGTGTGGTGGCTTGCTGAGTACTTTTGTACTCATTGTTGCTCTATATATATCTTTTAGCAGAGTGTTGAAGAGAAGCCCTTGTTAGTACGCTTGCGTAC
TTAACAAGATGATCGGAGTGCGATTCCATTCTAGGTCTCGTTCCCCAGTCGACTGCTTGTGGCATGTCAACCGGGCCCTTGTATTATTTTGTCTTCCGCT
GTTGTTCTCTGATAGTTGTTGGCCTGCCTGGCCCTAATGTAAGCATTTAACTCTCTTAGCCTGAATTCATTCGT