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Detailed information on CNT30110893


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30369556Oryza longistaminataOryza glumipatula101.3371.1393.1840forward
CNT30100560Oryza longistaminataOryza rufipogon101.3363.8392.98840forward
CNT30575145Oryza longistaminataOryza barthii62.9740.9197.89522forward

Expression of CNT30110893

Peptides detected in this lncRNA

>peptide 1 (89 aa)
HLPDPKYILRFNTALAASSHSSHLPVFQLQFLLFDNISRLYALGLLSASRIIGVVVVCTVQMRLLLAMNLFCCWSSSYPCMPGEVESRE*

>peptide 2 (65 aa)
MYASSISAPVDLDLVIRFVFFFFPLRLKKKQRRSRSLCVALSLTSYFLLVRSSSEFALQTCSVCL*

>peptide 3 (41 aa)
MLLRSLLPLTSISLSDSCFSFSLSALRRSKGGRVLFAWLCR*

>peptide 4 (34 aa)
APTRSKIYPSLQYSTSSFISFVPSSSLPAPVSSL*

Sequence

>CNT30110893
CGCACCTACCCGATCCAAAATATATCCTTCGCTTCAATACAGCACTAGCAGCTTCATCTCATTCGTCCCATCTTCCAGTCTTCCAGCTCCAGTTTCTTCT
CTTTGACAATATATCCAGATTATATGCTCTAGGCTTGCTAAGTGCTAGTAGAATAATAGGGGTGGTCGTGGTGTGCACTGTGCAGATGAGATTATTGCTA
GCCATGAACCTGTTTTGTTGCTGGTCATCTAGCTACCCGTGCATGCCCGGAGAAGTGGAGAGTAGAGAATAATTTGCAGCGCAGAGACGATGCAGCAATC
GGCTTCTTGGCTGTTGGGCACGCGTGTGGTTAGATGACCATCAGCAAACAAGTTCGTGGGACGCATGCATGGTTTCGTCGATTCTCTGGTTCATTTGAGG
TGAGGCTGCAATAGGAGTTCCTTTTTGTCATGTATGCTTCTTCGATCTCTGCTCCCGTTGACCTCGATCTCGTTATCAGATTCGTGTTTTTCTTTTTCCC
TCTCCGCCTTAAGAAGAAGCAAAGGCGGTCGCGTTCTCTTTGCGTGGCTCTGTCGTTAACTAGCTACTTCTTGCTGGTTAGGAGTAGTTCTGAATTTGCA
TTGCAGACTTGCAGTGTGTGTCTCTGAAGACGACGCTGCAAATCGCCGTCTCCGTGTGCTTAATTACGACAGGTTTGCAAGGAACAGCGGCTGTTGATGT
TGCTGATCATCAGCAATTCCGTGTTTATGCGTGTCTGATTGCAGGAAAAATGAGTACTAATAGTACCTGGTATGACGATCAGTCCCAGGTCATCAGTAGA
AATGGCGATCTTCCACACAAGATTTTTGT