« Back to Oryza longistaminata search


Detailed information on CNT30110840


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003385, E-value = 5e-92

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691985Oryza longistaminataOryza sativa21.7927.1688.27324forward

Expression of CNT30110840

Peptides detected in this lncRNA

>peptide 1 (59 aa)
GWAGPAATAARRRCACRCKCRCRCEISWRRRNFRCFSQLSSLCAYTSSDCFLEKEKFLV*

>peptide 2 (60 aa)
GGPGRQRRRRGGGARADASAGAGVKFLGEGEISAAFLNFHLCVHILVRIVSWRRRNFSSR*

>peptide 3 (98 aa)
MKLVSCLGFCFVLIESWPMTTTMTPAAARTSAPGGFLEGESGISLSSYGARTRCVEEPTLTAXXXXVFLAARGLVKAWYRVTMFGGEGPSLVAIPGST*

>peptide 4 (30 aa)
MISVFLHNLIRWDMPSLGQETFLPAIIYFIR

Sequence

>CNT30110840
GGGTGGGCCGGGCCGGCAGCGACGGCGGCGCGGAGGAGGTGCGCGTGCAGATGCAAGTGCAGGTGCAGGTGTGAAATTTCTTGGAGAAGGAGAAATTTCC
GCTGCTTTTCTCAACTTTCATCTTTGTGTGCATATACTAGTTCGGATTGTTTCTTGGAGAAGGAGAAATTTCTCGTCTAGGTGAGTTGGGATTTGATCTT
TGGGACTGAATGAAATTGGTATCTTGTTTGGGATTTTGTTTTGTTTTGATTGAGTCGTGGCCAATGACGACGACGATGACGCCGGCAGCAGCAAGAACGT
CGGCGCCGGGTGGATTTTTGGAGGGTGAATCCGGGATTTCTCTGAGCAGCTACGGCGCGAGGACACGCTGCGTCGAAGAACCTACGCTCACAGCGCNNNN
NNNNNNGGTTTTCCTGGCCGCGCGTGGACTCGTTAAAGCGTGGTACCGCGTTACTATGTTTGGGGGCGAGGGGCCAAGCTTGGTCGCGATTCCTGGCTCC
ACCTAAGCGAAATCCTCCGTGGCGCAGGTAAGGCACGAGCCAGCTCACCGCACTGTAAGAGGCCTAACAAATTTATCTCTAGGCCCTGTTTAGATCTCAC
CCTAAAACTTTTCACCTCGTCACATCGAACGTTTGAACACATGTATGAAGTATTAAATATAGGCTAAAAAATAACTAATTACACATATTGCGATTAATTT
GCGAGACGAATCTTTAAGCCTAATTGCTCCATGATTTGACAATGTAGTGCTACAATAAACATTTGTTAATGACGGATTAATTAGGTTTAATAAATTTGTC
TCGCGGTTTACTGACAGATTCTGTAATTAGTTTTTTTATTAGTGCCCGAACACCCTATAAGACATCCTATATAATATTCGAAGTAACCCGCCAAAACTTT
ACACCCCTAGCTCATTTTATTTGTCCCAAATAAATTATTCTTAGAGCAACTATTGTATCGGGCTTTGTGAAAGTAAAAAATAATTGTATTGAGAGTAGAT
AAAATAAAGAATAATTGTATTAGAGATTTAATAAAATAGAGGTATGCTATTGGTATGTATGGGATGGTGAAAGAAAAAACTTATTTTTGGACGGGATAGT
AGCCTACTAGCTTTGCCCTGCTTTCTGCATTGCACATTTGCGCATTCTATGTAACGCTAACTACTAGCTTGTGGAGGGTATTGTGGCCTTGTGGGATTAT
AGTAGCAACATGCCAAGTTGCCAACATGCAAGAGCCAAGGACGACAGTAAGTCAACCATGAATTAACAACTTACAGTATTACTGTAGATGTTGTGTGCTG
ATGAGGATGAGGGGTCTCCGTCTTATATATATGATCATGTTTAAGGGCTTCAGGTTTAGGTAGGGATTGCCCGTTTTCACGGCGGAAGTTTCACATGATA
TCTGTATTTCTGCATAATCTAATTCGATGGGATATGCCATCTTTGGGTCAGGAGACGTTTTTACCGGCTATAATATATTTTATCAGA