Detailed information on CNT30110721


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552138Oryza longistaminataOryza glaberrima77.4560.2298.3704reverse complement
CNT30595515Oryza longistaminataOryza meridionalis77.7873.9598.16707reverse complement
CNT3099916Oryza longistaminataOryza rufipogon73.8259.7598.36671reverse complement
CNT30580641Oryza longistaminataEchinochloa crusgalli13.9727.5583.46127forward

Expression of CNT30110721

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MQIGQKRSEPMPGLKLDDAFRFSSIPSAHLRGSEHHRRRRH*

>peptide 2 (40 aa)
MAMSFRLDIRQIEQPIPHQPWPPLPAHQDRVLASYKLITM*

>peptide 3 (49 aa)
FLCSKTRFSKSFHIFHQPTNQQYAHKNSNNSQQKRVYYNSKFSINYFGN*

>peptide 4 (43 aa)
FYVQKHGSPNHFIYSISPQINSMHIKILTTRNRNESITIRNSA*

>peptide 5 (48 aa)
MNFSRSLSLRGSRREGGFLAVVGFLNLKDSERLRMEVVSSLYCMTLWL*

Sequence

>CNT30110721
TTTTTTATGTTCAAAAACACGGTTCTCCAAATCATTTCATATATTCCATCAGCCCACAAATCAACAGTATGCACATAAAAATTCTAACAACTCGCAACAG
AAACGAGTCTATTACAATTCGAAATTCAGCATAAATTATTTCGGAAACTGAGCATATGCAAATCGGTCAGAAAAGATCGGAACCTATGCCTGGCTTAAAG
CTTGACGATGCCTTTCGCTTCTCCTCGATCCCCTCTGCTCATCTGAGAGGATCGGAGCACCACCGCCGCCGCCGCCATTAGTAGCAGGGGTACACCACGC
AGCGCCTGCGCCGCGGCGGCGTGCACAGCATCAGCAGCAGCAACGCGAGGACGACGGCGACGAGCAGCCCCAGCAGGTTGAACTCCGGATCGTCGTCCGT
CTGGCTGCAACACAGCTTCCCCATGCCACCCGCTTCAGAAGGAGAGGACGAGAGTTCTTGGCTTGCAAGATGAACTTCTCTCGGTCTCTTTCTTTGAGAG
GAAGTAGAAGAGAAGGAGGCTTCTTGGCAGTAGTGGGTTTTCTGAATCTGAAAGACTCTGAAAGACTCAGGATGGAGGTCGTCTCGTCTCTGTATTGTAT
GACACTTTGGCTATGAATCTTGGGGTGCTTTCAAGCATCATGTGGGCTGGCTGGTTGTTGAGGCATCACTGTCTAGCCCTTCCATGATGCAACTTCTTTT
CCATGGCTATGTCCTTTAGGTTGGATATCAGACAAATCGAACAACCAATTCCGCACCAACCATGGCCACCACTACCAGCACATCAGGATAGAGTTCTTGC
AAGTTATAAACTTATAACTATGTAGATTGAAATGCATTTCGGGATTTAACTTGTGTTGATTAATCTTGAAATGTCTAGTTTTAAATTTCTTTCTGATTTC
AGTATGGTG