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Detailed information on CNT30110392


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006824, E-value = 1e-64

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697530Oryza longistaminataOryza sativa48.0120.5794.04604reverse complement
CNT30555565Oryza longistaminataOryza glaberrima48.0128.6993.87604reverse complement
CNT30371506Oryza longistaminataOryza glumipatula48.0119.7393.05604reverse complement
CNT30104613Oryza longistaminataOryza rufipogon48.0122.0493.54604reverse complement
CNT30578599Oryza longistaminataOryza barthii48.0119.8793.71604reverse complement
CNT30117986Oryza longistaminataOryza nivara48.0130.0694.04604reverse complement

Expression of CNT30110392

Peptides detected in this lncRNA

>peptide 1 (42 aa)
LNLVKIIISGKLKDLSAKVPNIPYLYEFHLFWKLEITKTLSN*

>peptide 2 (33 aa)
MQTGHNLDMCIFLEGLGSVSMNLISFKSNEAQP*

>peptide 3 (31 aa)
MYLCPSWSKGFSAQEGSSWRSSIFSKITIDP*

Sequence

>CNT30110392
TCCTGAATTTGGTTAAAATTATAATATCAGGAAAACTAAAGGACCTTAGTGCAAAAGTACCAAATATCCCATACCTTTACGAATTTCATTTATTTTGGAA
ATTGGAAATCACTAAAACTTTATCCAACTAAAGCAGTCAAGCTGAGGTGTCAAAATTCCAAGTACTAACCATCATGCAAGTAGGTGAGTCACCTAGTCTT
CACCAAAATTCAATTAGATATAAGCCAAGCTATTGAGTGATCCAGTCTCGGTTGCATCGGCTGGAAAACCACCTCAAGCACCTGCTGCACTAAAGCAATA
GCAGCAGCTGCAGCAATGGAAATCATCACCAGCAGTTCTATTGGAGATCCAGTTCAAGTCAGAGAGGGATAGCAGAGAGGCAGTAGTCCAGTACCACAAT
CACACCATATCTCAATAGTAACAGCCAGGGAAAAACAACAAGCGAGGCCAAGGAGTAGGAGGAAGAGTAAGAAGTTCTAGATCAAGAAAGAAAAGAAGCA
GAGCTTTAGTGATGTACCTGTGTCCCAGTTGGAGCAAGGGGTTTTCCGCTCAAGAGGGCTCAAGTTGGAGAAGTTCTATTTTTAGCAAAATCACCATAGA
TCCATAGAGGCAGCAGTAGAGGGAAAAATCTGGATTTCTGAAGGAGGAGCAGAACCACACATCTTTCAGTCACCATAGAATCAACAGAGGTAACCAAAAA
TTAAAATAGGGGAGAAGAGTAGATCCTGCATACATTGTAGCAGCAATTGTTAGAGCTAGAGTTTCATGTGCATATATACCATACATCCTGACCAAAACCT
TAGAAATTCCAAATTAATATAAGTGACAAAAATAAGGAGGCTATAGTTTAAGATAAATGTCTGTCTTTAAATCTTAATATAGACATATATAAATTATTAT
ATATGAAATCTGGATAGCATCAATAAGCATGTGTAGCTGTAATTCTTGTATAAATCAACTAGTGTTCATGATATAAATTATTTAGGAATAGAGCATGTAT
AGAAGAACCTGGTCATGCATGAGAACTTGTATGTTTGCATATTCTAGTCATGCAAACAGGGCATAATCTTGACATGTGCATATTCCTGGAAGGGTTAGGA
TCTGTGTCTATGAATCTGATTTCATTTAAAAGTAATGAAGCTCAACCCTGATTTAATAGAGAAAACATCATAAATTATTAATAGTTTGATTTGAAGGATA
GCATGTGAAATCAGTAGGTTATGAATCTGGGTGTACATTTAAGCATGTATAGTGTTAA