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Detailed information on CNT30110310


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30444207Oryza longistaminataAegilops tauschii99.3966.997.791132forward
CNT30656303Oryza longistaminataTriticum dicoccoides71.7378.9498.29817forward
CNT3018043Oryza longistaminataZea mays98.6869.2598.841124forward
CNT30719923Oryza longistaminataTriticum spelta98.673.6498.221123forward
CNT30369005Oryza longistaminataSorghum bicolor98.671.5799.381123forward
CNT30117001Oryza longistaminataOryza nivara83.236099.89948forward

Expression of CNT30110310

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MMRRRHEGRAIRRVIMNHRISGRSPRQPFI*

>peptide 2 (32 aa)
MKYECPRLSLLIITPIPKANTIGPESYDVIPC*

>peptide 3 (44 aa)
MLSQLFVFHKSKNFTSDYEIRMPPTVPVNHYSDPEGQHNRTGIL*

>peptide 4 (42 aa)
RSRSLTELTRQIAPPTKNGHAPPPIESRKSSQSVNPCYVWTW*

>peptide 5 (53 aa)
MMLSHANVSRAMACFEHSNFFKVTAPEARPGQLRPGAHRRQKGPTTSFLTATT*

Sequence

>CNT30110310
CGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTC
TGTCAATCCTTGCTATGTCTGGACCTGGTAAGTTTCCCCGTGTTGAGTCAAATTAAGCCGCAGGCTCCACGCCTGGTGGTGCCCTTCCGTCAATTCCTTT
AAGTTTCAGCCTTGCGACCATACTCCCCCCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCCGATCCCTGG
TCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGAGCCCCCAACTTTCGTTCTTGATTAATGAAAACATCCTTGGCAAATGCTTTCG
CAGTTGTTCGTCTTTCATAAATCCAAGAATTTCACCTCTGACTATGAAATACGAATGCCCCCGACTGTCCCTGTTAATCATTACTCCGATCCCGAAGGCC
AACACAATAGGACCGGAATCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGATGGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACGGCGCCG
GAGGCACGACCCGGCCAGTTAAGGCCAGGAGCGCATCGCCGGCAGAAGGGTCCAACTACGAGCTTTTTAACTGCAACAACTTAAATATACGCTATTGGAG
CTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAATGGATCCTCGTTAAGGGATTTAGATTGTACTCATTCCAATTACCAGACACTAAAGCGCC
CGGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCT
CTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTAGGCCCCTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTC
GCCGGCACGAGGGCCGTGCGATCCGTCGAGTTATCATGAATCATCGGATCAGCGGGCGGAGCCCGCGTCAGCCTTTTATCTAATAAATGCGCCCCTCCCG
GAAGTCGGGGTTTGTTGCACGTATNNNNNNNNNNTTCAG