Detailed information on CNT30110252


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006839, E-value = 7e-143

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695317Oryza longistaminataOryza sativa10031.2499.3284forward
CNT30554733Oryza longistaminataOryza glaberrima57.3914.4999.39163forward
CNT3067785Oryza longistaminataLeersia perrieri60.2113.9583.63171forward
CNT3099738Oryza longistaminataOryza rufipogon99.332.2798.58282forward
CNT30574622Oryza longistaminataOryza barthii98.5938.6798.57280forward
CNT30117505Oryza longistaminataOryza nivara76.7610098.62218forward
CNT30551818Oryza longistaminataOryza brachyantha82.0453.0886.7233reverse complement

Expression of CNT30110252

Peptides detected in this lncRNA

>peptide 1 (37 aa)
ERIPVMSYASCVVIALPRAARAMSDLLQLGSCPVGLP*

Sequence

>CNT30110252
AGGAGAGGATTCCGGTTATGAGTTATGCTTCTTGTGTGGTCATTGCTCTGCCGAGGGCGGCGAGGGCAATGAGTGATCTCTTGCAGCTTGGCTCTTGCCC
GGTTGGTTTGCCCTAGTGGGGTTGTGGCACCACCGGTTTTATCTTTTGCTTATGAACTCTATTTGAGACTTCCGCTGCTATATTTATGTGTTGTATGTTG
GGACCTCGGACCCTATTATGTGTCATGTACCTCGCTGCACTTTAACCCTATTATGGTACTTGCTATGTTTATTAATTGCTTGCG