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Detailed information on CNT30110249


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000770, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30689906Oryza longistaminataOryza sativa75.3623.7595.83575forward
CNT30597133Oryza longistaminataOryza meridionalis48.8914.9593.57373forward
CNT3099887Oryza longistaminataOryza rufipogon76.6725.6494.02585forward
CNT30574690Oryza longistaminataOryza barthii75.7525.5595.67578forward
CNT30116758Oryza longistaminataOryza nivara60.1646.695.64459forward

Expression of CNT30110249

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MVISCVPIGGECAQTDLRTSLNVSSFRIQYNHMC*

Sequence

>CNT30110249
CTACACTATACCGACGAAACTTCTAAAATTCATAACTCTCAAATGAAATGAGATAAAATAGAAATTATTTCACCTAAATTCATTTTAGACAAGCACTTAT
CCACTCTGCACAAATCATGCGTTTTAGAGCATTTTGGATTTTTCGCATATTTCGGTGTTTAATTGCATAACGTGTACTTTGTATAGATGATTGCTTAAAC
GGTGAAGAAGTGATTTAGGTGCTGACATTTTCCTGATTCAAGGCAAGTTCCATCTCCCTCTCTTTGATCACTTTGAACCTATGTTTTGGAGGTTATTGAA
AATGTTTGCAAATCTTGCATGTCGATTGTACACTAACAAATTAAAATTTTGTTAAACTTGTTAGACAAACTCCTATTATTTGCATTATCACCTTAACCCC
ACATATATCCATATCCATCATTCCTAACCTTAGGAACAATATGACTATACCACTTTATATATGAGTTTTGGTGACACTAGGTTACTATAAAGCTTAGCCA
TGCTTAGAATGGTCTTCCTTGTCATTATGGGCTCATTACAAACATGAAAATTGATTTTTAAATAATCTGGACAGAACTTTAATACTTGTGATTTTGATAA
ATAAAATGGTGGAAAACATGGATTTTAGGTTTGGGCCTCAAGTGGTGCACATATGGTGATTAGTTGTGTACCGATAGGGGGAGAGTGCGCCCAAACCGAC
CTAAGGACTTCACTCAATGTCAGTTCATTTCGTATACAGTACAACCACATGTGCTAGTATGGG