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Detailed information on CNT30110178


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690033Oryza longistaminataOryza sativa28.0947.899.06532reverse complement
CNT30552380Oryza longistaminataOryza glaberrima48.4760.7599.13918reverse complement
CNT30595455Oryza longistaminataOryza meridionalis11.423.9594.91216reverse complement
CNT30100012Oryza longistaminataOryza rufipogon48.4736.2499.35918reverse complement
CNT30574808Oryza longistaminataOryza barthii48.4766.3399.13918reverse complement
CNT30117877Oryza longistaminataOryza nivara48.4762.6699.46918reverse complement

Expression of CNT30110178

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MKLRSRSKIERKSRKRISLKRRKRITSSRSCQEAVKYYQ*

>peptide 2 (52 aa)
MPWMLLLLSITISMKLEADSEVLARFNKPNFSHTLIAALLSWLINYVKITLN*

>peptide 3 (32 aa)
MPLVSLASQTRRGVPQCSTITAFSPVKMPTGS*

>peptide 4 (32 aa)
MALPLSKIIYQDSILLNYYFGLLNGIILQPFLL

>peptide 5 (37 aa)
MLNHHCFQPCQNANRKLTSGRFALVRKTVMLFWLGKM*

>peptide 6 (38 aa)
MNQQVVVTMAKQSESGEPNLKEKVEVFSSWMNSNYGRR*

Sequence

>CNT30110178
CAAAGATTCAATAATTATTTAGTTTTCAGAAAAACTCTTGAGTTCTAGAACAATTACAAATCAGTCCCTAATCTCAGAGTAACCTTCAATTTTAGAGACC
CCGAGGGACTCAAGTGCAAAAGTACCTAATTGTATCAGAATTTATGTAACTAGAAAAATTTAGTGAAATCCCACATTACTCCACCGATCAAGCATTGCTT
AGGTGTCAGTCAGTGAAACAACCACCAAAACTAAAGTAGGTGAGTCACCTAGTCTTCACCAAATTCACATATATATCAACCAAGCTATTCAGTGAACCCC
AGCCTCGGTTGCATCGGCTGGAAAACCACCTCAAGCACCTACCGCAGTAGAGCAATAGCAGCAGCTGCGGCAGTAGTAGTTAGAATCATAGAACCAAGCT
TAGGAAAATCAGCTAGAATGTTAGCTCCACCCGGAGAGAAATAGCTCTACTGAAGTCCAGCTCAAACCAATACATGAATCAACAAGTAGTAGTAACCATG
GCCAAGCAATCAGAGAGTGGTGAACCAAATCTGAAGGAAAAAGTAGAGGTGTTCAGTTCTTGGATGAACTCCAACTATGGGAGGAGATGAAACTCAGGTC
AAGAAGCAAGATAGAGCGAAAATCAAGAAAGAGGATTAGTCTCAAGAGGAGGAAGAGAATCACCAGTAGCAGATCCTGTCAGGAAGCAGTCAAGTATTAC
CAGTAGAGCAAGAGCCAAGGAGGAGAATTACCTGAGTTCCAAGTAGAGCAGGGGGTTCAGTTCAAGAGGGGGAACAATCAACCAAGCTCAAGGTGGAGAA
GCTCAGTTCTAGCAAAATCACCTTAGATCCAGAAGAGCAGCAGTAGAAGAGAAGACTTGGATTTCTGAAGGAGGAGCTGAACCACATATTTTTCAATCAC
GGTAGAATCATCAGAGGTGTGAGCAGTTGACTAGCTGATGAGGCTTGATGCGGGTGCTTACTTAGTTGAGTGACAATGCCGCAGAATTCTTCGGAGGTGC
CAATCTGAATACACCTTGGCACATTTCAGTTTCAGGAATTAAGAGGAAGCCAAGCACCAAAAGGACCTCATGAGCTCATGACACATATCGTAGGCTGCAA
ACCAGATTGATTCTATGCCCTGGATGTTGTTATTGTTATCGATAACTATCTCCATGAAGCTTGAAGCTGATTCTGAAGTATTGGCGAGGTTTAATAAGCC
CAATTTCTCCCACACCCTCATCGCAGCCTTGTTGTCATGGTTAATAAATTATGTTAAGATTACTTTGAATTAAGATACACCATGTAATATCAATATACTT
TCTGCTGGCATATCAAGTTTGACGGTTATATTTCTGCCAATCTGGACGTGCTCCAAAGAAACATTTCAAGATTTTCATCCTGCTATGCCTTTGGTGTCTC
TGGCTTCACAGACACGACGTGGTGTTCCGCAATGCTCAACCATCACTGCTTTCAGCCCTGTCAAAATGCCAACAGGAAGTTAACCTCTGGGCGGTTCGCT
TTGGTCCGAAAGACCGTGATGTTATTCTGGCTTGGAAAAATGTAATTTCATCCTCTATTCATGCTCTAAATTAGCTGTAAATCTGGACTGTAATCCTTCA
TGTACTCAAGTTCCTTGCTTATTGTCAGTTTGAATGAAATTCAGGTGGGGAATCTCTCCCCTCCGGTGACTTGGTAAAAAAAAAAAAGTTTGACGGTTAT
TATACTTCCTACCTGAGTATGGAACCTCGGTTCGTTAATTTGGATATGGGTTGGGGCCATAGTGCCTGATATAAGTTGATTTGTGATGCTTTCATGGCAT
TGCCACTTAGCAAAATAATTTATCAAGATTCTATTTTGCTCAACTATTACTTTGGGTTGCTAAATGGAATCATACTCCAACCCTTTTTATTAAG