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Detailed information on CNT30110171


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697958Oryza longistaminataOryza sativa14.7124.684.78138reverse complement
CNT30115771Oryza longistaminataOryza nivara14.7128.0584.06138reverse complement

Expression of CNT30110171

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MPVICFYCEGSGLCSCGTIMYLCCSYNLVLHL*

>peptide 2 (75 aa)
MWSFLLDLGSSPSLLTARGRTGAVDPANSSPPSQIPWSLRSLLRGSAVGCDGRGWIRRPLPLQLGSRRLSTPRSR*

>peptide 3 (82 aa)
MVSPLPLARIRRRLRREGLDTATSSSPARIPSSLYAPLTLICRERRREGPDPVVSTVVAASLPPPLLHAWPVHRTLPSPSPG*

Sequence

>CNT30110171
CACGGTCAGAGCAGCAAGCGTCTGATACCAGCGTGACTGCGTGAGAACTTTCTCGTTCTCTCTCGTTTTCTCCGGCGAACAGAGAGCGACATCTGCGCCT
CCGCCCTCGCCTGCTCCTCCCAGCAGGCTTGCTGCTCTCCCTCCCTTGAGGCGCAGGTGAATCCCCCTACACTTACTCCGGCACCGGCGTCAGATCTGAG
CGGAGGGACCGGCCCCTAACTGTTGTCGTCAACCAGATCCACCACTGGCTCCTAGCCGTCGTCGCCGGCCACCGGATGTGGTCATTCCTGTTGGATCTGG
GCTCTTCCCCCTCGCTCCTGACGGCGCGGGGGAGGACGGGAGCAGTCGATCCGGCGAACTCTTCCCCTCCTTCACAGATCCCATGGTCTCTCCGCTCCCT
CTTGCGCGGATCCGCCGTCGGCTGCGACGGGAGGGGTTGGATACGGCGACCTCTTCCTCTCCAGCTCGGATCCCGTCGTCTCTCTACGCCCCGCTCACGC
TGATCTGCCGCGAGCGACGACGGGAGGGTCCAGATCCGGTGGTGTCCACCGTGGTCGCGGCTTCCCTGCCGCCGCCACTTCTGCACGCGTGGCCCGTACA
CCGCACCCTGCCGTCTCCTTCCCCAGGTTAGTATGCCTGTCATATGTTTTTATTGCGAGGGATCTGGATTATGTAGTTGTGGCACTATAATGTATTTGTG
TTGTTCTTATAATTTAGTTTTGCACCTATGATAGCGTGTTACTTGTGCTTGGCTGCTTGCGAGGTTTGGTGGGTTGTCACTGTGTTTGGAGCTGGTTGTT
GAGCCGATTGGAGTCAGAGATGGTCGCCAAGATGGAGGGGAGATGTCACCCGAAGTTGTCTCGGAAGCCGCAATCAAGGTATTGACTGAATATGGTCTCA
TTTGGCAGTTTGAAGAACTTTGAAGCAGTTTCAATAGC