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Detailed information on CNT30110043


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004001, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30117985Oryza longistaminataOryza nivara93.795.4997.151756forward

Expression of CNT30110043

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MCCCEKKLIEEQINCCSLIVTSCCKATCGMGRGVSLLPTTKT*

>peptide 2 (40 aa)
MKMKTSTRPPRSISRSKPSMKTSRCFVPSPKPRLWNKIDA*

>peptide 3 (42 aa)
MMRSHAFVVWLRIVVKDRFLWEIHPNTLQCDHTGIYGMPLAK*

>peptide 4 (92 aa)
MPLWFGYVLSLRTDSFGKSIQTRYSATTRVFMGCLWLSKLFSHGSWCANGCGMPRMRRRSVTHFLPIMGVFLPLLWRGTSRSRRHPRYFLSG*

Sequence

>CNT30110043
CGTAACTCCGATTGACCCCGTTCAAGTTCCTAAATTTTTCTAAAATTGAGATCTACACAGTGGCACCATTGTTTCTCTGATTTGAGCTAGTTTTATTGCC
TTTTCTTATTTAGTTTTATTTTTCGCGTTTAGAGCCCGAGTTCGAGGAAGCTCCGGACGCCGCTTTCGAAGGAGAAGACCCCAACCCTGTGCAAGGCAAG
CCTCTTTGATCACATTGCCCCTATATTTGCAAAGATATGTTGTTTGAAAAGTGCATTGCTTAGTTCACACGATTAACATGTTAGGCCTCGGATTGTTTAT
ACGTCCGACGGACCAACCTAGTAGTCGCACTTATATTACATAGGTTGATGTTTCCATACCTTTGATAGCTCCACAAATGTTTGCGCCGGTATCGTTATTC
GATTACCGAGGTAGTTTCGCTTAGCCATGCTTACGTTGTTGCCGTGTGGGAAACTTGGGTTATTCCAAATCCATGTTTAAAAATCCGGTACGTTGTACCG
AGGAATTGTGAAATAAAATGTGTTGTGAAAGTGGTGATGATGCGGAGTCATGCCTTTGTGGTTTGGCTACGTATTGTCGTTAAGGACCGATTCCTTTGGG
AAATCCATCCAAACACGTTACAGTGCGACCACACGGGTATTTATGGGATGCCTCTGGCTAAGTAAATTGTTTTCACATGGGAGTTGGTGTGCCAATGGTT
GTGGAATGCCGAGGATGAGGAGACGAAGTGTTACACATTTTTTGCCCATCATGGGTGTCTTTTTGCCTCTATTGTGGCGTGGTACCAGTAGGAGTAGGAG
GCATCCTCGGTATTTCCTGAGTGGATGACGGCTGTCATTGCCTGATACTTGGCTATGGATCTTAGCCCAACTAGGTGGCATGCGATTTTCATGGGTTAGC
TTTGGAAAGGCCTTATCACGAACTTTCGTTGCCGACGGGTAAACGATGTCAGTTTCGTGTCGTGTGGGTAAAGCGTGCAACCTCTGCAGAGATTAATGAA
CTGTTCGAACAGCCGTGCCCACGGTCAAGGGCGAGTGTAAGGTGTTTCTCATAGCGTAGATTTGTTTGACAAATGTTTGTGAAGAAGTGGTTACTGGGAA
GGGTAACGTTACCAGAGTCCGCCTGTGTGGCAGACGGCTAACCTGGGTGGTTAGGAACGGGTCTGTGTGACCTGGGGTGTCGTCCGACACCGAGGTGTTG
TTAGGGCCATGATGATGGCGTTGTTGTGCTGAGATAACTGTGTGGACTATGTGTTGTTGTGAGAAGAAACTAATAGAGGAACAAATTAATTGTTGTTCGT
TAATCGTGACAAGTTGTTGCAAAGCAACTTGTGGAATGGGTCGAGGCGTGAGCCTCCTCCCGACAACTAAAACTTGACTCACTCACTAGGAGTTTTGTGA
AATAAATCACTTTGCCAAAAAGGCAGCTTTCGCAAATAAAACCTTAGCCTCCTTGTTTAAGCCAAACATGTCATTCTTTCCCCTGGCTTGCTGAGTACGT
TAAGTACTCACCCTTGCCCCTTATAATAATATATATAGAGTATGAAGATGAAGACGTCGACCCGACCGCCGAGGAGTATCTCCAGGAGCAAGCCGAGTAT
GAAGACTTCTAGATGTTTCGTGCCTAGCCCCAAGCCTCGCCTGTGGAATAAGATAGATGCCTAGGTTCTTCGCCTAGTGCATAGTTGCTTAGTCGCTTAG
TGCTCCGCGCTGTTCGCTTCTGCGCCGTCGCTTTTATGGTTTTCTGTAATGTTGTGTTGCTCATCTATGGGCCTGTCCATGATAGCAACTTATGTAAGGA
CTACTACCCAGTGATGTAATAAAGCAGTTTACTTTGATTCCACATTTATTCTGTGTGTACCAGCTAGTGTATCC