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Detailed information on CNT30109999


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000626, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3066602Oryza longistaminataLeersia perrieri28.5227.8686.6373forward
CNT30595602Oryza longistaminataOryza meridionalis30.229.1598.99395forward
CNT3099527Oryza longistaminataOryza rufipogon73.5562.9696.88962forward
CNT30574705Oryza longistaminataOryza barthii73.4768.5997.09961forward
CNT30115488Oryza longistaminataOryza nivara73.5575.8197.19962forward
CNT30550371Oryza longistaminataOryza brachyantha42.5120.7488.13556forward

Expression of CNT30109999

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MRFMNNNLDDEYTLDVLEYLDEAWAGKLFLVVITRSRSCVMDLLSRCSLAGLALCLSD*

>peptide 2 (61 aa)
MEKEDLPKLFSCPTWPSTCLVDTFAASAVEASSSTPPAKLRSSENTAWVACRAAVSGHCWG*

>peptide 3 (36 aa)
MPALVFMPINRGRAQNKSFNRTLMFMFQCILMELWL*

>peptide 4 (44 aa)
MHCCRLYMKPNEIQEPYVDCRTNYFPSKEGEILVELYCLWCPAV*

>peptide 5 (57 aa)
MGCMQGSGVRPLLGVERNPGEGSSMEYAVLGFIYREYMRFLSQSGSLGGGVPFRRPK*

Sequence

>CNT30109999
GGACAAAGTAGCACTGTAACTAGGATCATGAAGTCAATTTTGTGTTTATCATCAATCTATTGAATTCGTTCAAAAAAATATAATCAATCTACTGATGCAT
TAAATATCTTAGTATAAAACCTAGCTAATTTAACATATTGTGCAAGTATAGTATTATTATATCCTCTGCAAGTATATCCTCTACTGCCTGGGGCTTTGCT
TTGCATTTCCCAGATAACAGTAACCAAACACTCACTTGAGCTTTCCAACTAAAGAAATCAAGAAAAGATGCCATGACAAATACTACTTCACCACAAAAGA
TACAGTAGCCTCCACAACGAGAGCACTAGTTCTGATTATTACTATTGTAATAGCACAACTGATACATGATGATGAATTCTATCAAGAGAGCTCCGGGGAT
ATAGACACTCCATTACCATCTTCTTGTCGAGATGGAGAAGGAAGACCTGCCAAAGTTGTTTAGTTGCCCTACATGGCCTAGCACCTGCCTAGTGGATACC
TTCGCTGCATCGGCCGTTGAGGCATCGTCTTCAACACCACCGGCGAAGCTGAGAAGTAGTGAGAACACTGCATGGGTTGCATGCAGGGCAGCGGTGTCAG
GCCATTGTTGGGGGTAGAGAGGAATCCAGGAGAAGGGTCCTCCATGGAATATGCTGTGCTTGGTTTCATTTATAGAGAGTACATGAGGTTTCTTTCACAA
AGTGGAAGCTTAGGTGGTGGAGTGCCTTTTCGCAGACCGAAATGAGGTTTATGAACAATAATTTAGATGATGAATACACTCTAGATGTATTGGAGTACCT
TGACGAAGCATGGGCTGGAAAGTTGTTTTTGGTGGTGATCACCCGGAGCAGATCTTGCGTCATGGACCTACTTAGCAGGTGCAGTTTGGCTGGTCTTGCA
TTGTGCCTGTCAGATTAGTGCTGTACTTGATGCATTGTTGTCGTTTATACATGAAACCAAATGAAATACAAGAACCATATGTAGATTGCAGAACAAATTA
TTTTCCTTCTAAAGAGGGTGAGATCTTAGTAGAACTTTATTGCTTGTGGTGCCCTGCTGTTTGACAATGTAATTGGTGCGAGACACTGGCATATGATCTG
GCCTGGGCCTTGTGGCCTGGGCCTTGTGTATGTTGTTATCAGACTGGACTAGGCCAGGTGGGCCTTATGCCTGCTTTGGTCTTCATGCCAATAAACAGAG
GGAGGGCCCAAAATAAGTCCTTTAACAGGACACTGATGTTCATGTTCCAATGTATACTTATGGAGTTGTGGTTATAACTTATAAGTTGCAAGGGACAGAT
ATTGCCCA