Detailed information on CNT30109993


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30104552Oryza longistaminataOryza rufipogon63.1971.4399.921195forward
CNT30118002Oryza longistaminataOryza nivara54.6870.6399.811034forward

Expression of CNT30109993

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MMRWTIIVYALSMPNATSLDVSEMLHTSFFRRIME*

>peptide 2 (44 aa)
MFIEVTICSFSGIKWLCACATFTVFFYFVLDRRSLDKPGLKCAA*

>peptide 3 (47 aa)
MYTRQWYGHACPINLASTLMDYSCGIWEANLMDYSCGNWEVNNSSKE*

>peptide 4 (48 aa)
MLICRSCISEVVFVKASFYVYRSNYLFFFWYKMALRLCHFHGILLLRT*

>peptide 5 (71 aa)
MLPLHHVQMRISAVREEEGDTLRCLCLRPSRRLIHLSLRPLPLAPLRCHHHLILPAGPGLSSSLPAISSVQ*

>peptide 6 (97 aa)
MEVSLPTALAVGGATGGEVVETSSSAGPPHASPPPCPDAHLCCERGRGRHPAMSLLASKSAANPPEPATTASCSTSVPPPPHPPSRPWPLVLTTCHL*

Sequence

>CNT30109993
TTGGGGAGGGAGGAATTTGTTCGGTGCCTCGGTCGATATCCTCGCCGGGGAGTAGATTGTTAGTTTGAGATGGAGGTATCGTTGCCAACTGCTTTAGCAG
TTGGTGGTGCTACCGGCGGCGAGGTGGTCGAAACCTCCTCGTCTGCTGGACCACCGCATGCTTCCCCTCCACCATGTCCAGATGCGCATCTCTGCTGTGA
GAGAGGAAGAGGGCGACACCCTGCGATGTCTCTGCTTGCGTCCAAGTCGGCGGCTAATCCACCTGAGCCTGCGACCACTGCCTCTTGCTCCACTTCGGTG
CCACCACCACCTCATCCTCCCAGCCGGCCCTGGCCTCTCGTCCTCACTACCTGCCATCTCTAGTGTTCAGTAAGTGCTGCCAAGATATACTGACGAGGGC
TGCTCACTGACAAATCTTGTACCGTATGTATTACATTCACAAAATAATCTGTTTTCTATCCTTTTTTAAACTAAACATTATAGGGTTGGTAGCGCAATAA
TCTCCTTTCAGCACTTATCATTCAGATCAGTGTACCTATAGCATGGCATTGTTTTTCCTAGGTGAGAAGTGATATTAAACTCATCTGAAGCTGTCGAGCA
ACAAATTTTTTTTATACCTCTTTTACTTAATTCAGATGCTCATTTGTCGCAGTTGTATATCTGAAGTTGTTTTTGTAAAGGCATCATTCTATGTTTATAG
AAGTAACTATTTGTTCTTTTTCTGGTATAAAATGGCTTTGCGCTTGTGCCACTTTCACGGTATTCTTTTACTTCGTACTTGACAGGAGATCCCTGGACAA
GCCAGGACTTAAATGCGCTGCCTAAGTGCTTCTACCCAAGTTGATAGAACTGTGTTCAATGTATACCAGACAATGGTATGGCCATGCATGTCCCATTAAT
CTGGCCTCTACTTTGATGGACTATTCTTGTGGGATCTGGGAAGCAAACTTGATGGACTATTCTTGTGGGAACTGGGAAGTAAACAACAGTTCTAAGGAGT
AACCAACAATTCCTTCTATAGTTTTGTGTAAAGTATTAAATTGCTACCCCTCTTATATGCATTTAAATGTGTCATGTGTATCACAAATAGTTGAGTATTC
TTTCAACTAGTGACCCATTGCCACAGGTCTGCTCACTAATCCAATGATCTTGGCCAGGTCAATTATTCCATTGGGCTATGTCTGAGTCCTGCAAGGTTTT
TTCCTCCACTTAGCATAATTTTTTTTCAGTAATGTAGTCTTAAAAAACTCAATTTTTTTAGCTCCCATCATATGCAAGCTCTTGTTTCCTTCTTTGTAAA
ACATCAATTCTTCTAGTTTTCTGTATCTAAGTAATATACTACGTAGTTCAAAATTAGAGACATGATGAGGTGGACGATCATTGTTTATGCCCTTTCTATG
CCAAATGCCACTAGTTTAGATGTTTCCGAGATGTTGCATACTTCATTTTTTAGGAGGATCATGGAATAAATAATGATACATGAAGATTGCATTCTCCTAG
TTCTACAATTTTTGAAATAAAGGATTTGTGTTCCTAAATCAGACCTCATCATTTCTACAGATGTTCTTTTTGCTACCAGCTAGAGGGATCTGATTTGCAC
CAGTGCCATCGGATAGTCACCTGTGCTGGACTTCCAAGTCAACCGGCTTATTTGCTAATCATTAAGAGGGGTGGTCAAACTGCCTACAACGCCGTCCATC
TACTTTTTATTTTTTGTTTGCACGACTTCTTGGTTGCCTAAGCTTGTAGGCAGAGGAAGTAATGCTCAAATTCATCTCAATTTTAGTTGTTTCTGAGATT
GGTATTTCAATTGTTCCATATTAGATTGGCATCAAATTGATTAACTGAACTTGGATGTGTCAATGCATTTCAATCCATTCTTCTGTGTTGA