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Detailed information on CNT30109981


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690940Oryza longistaminataOryza sativa57.7366.6297.97493reverse complement
CNT30117920Oryza longistaminataOryza nivara89.4660.6894.37764forward

Expression of CNT30109981

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MLLIRVSTHIQIHDVIHVSLFRMFCLHYSRTMRSHGSAIWVFIHDP*

>peptide 2 (54 aa)
MALTLCYLFVFRPIFKFMTLFMFHYSGCSVYIIQGPCVAMGVQFGSLFMILEKR*

>peptide 3 (46 aa)
MRSFAPQVWRVPTLEELSRSIEGVKASTRRTYVMDKTELFCLALLA*

Sequence

>CNT30109981
TATGTTCTAGGTTTCGATTTTAGTAAATATCCCTTGTAACCATCGTTAGTTGAATATAGTGGTTTATGCGTAGTTTTGCTCCACAGGTGTGGAGGGTTCC
AACGTTGGAGGAGTTGAGTCGGAGTATCGAAGGAGTTAAGGCAAGTACAAGACGGACTTATGTGATGGACAAAACTGAGTTGTTTTGTTTGGCTTTACTT
GCATAATTATTATTCAATTGCTTGATATTACTGATTGTATGGCTCTGACGTTATGCTACTTATTCGTGTTTCGACCCATATTCAAATTCATGACGTTATT
CATGTTTCATTATTCCGGATGTTCTGTTTACATTATTCAAGGACCATGCGTAGCCATGGGAGTGCAATTTGGGTCTTTATTCATGATCCTTGAGAAGCGC
TGATCACGCTTGCTCGGCTTACCAGTAATGCTAAGAGGATATTCATACCTGCCCGGGAGGGAACTACTATCTTTTGACTTCTTTGGTTTAAAATAAAGTA
CCTAATGACATTGATCGGCATGGGGCGGGAGTAGCACCCTTGGACTACACATTATCATTGCACACATCTGAAATTTAGTTTTAGACTATAATTTTTTTTG
CTCAGCATACGTGTTGCATAGAACTTGTAAAGGTCATTTAAGGTTCTGATTCTTATTTTTTCACGTGGGGTTTGTGGAGCTAGGATTGTGGATTATATCG
GTATTGACTTTTCTTATAATTGCCTGTCGTGGATGTCCGTATTTTTAGGAGAGACTCTGCCGAAATTTCTAATAATTTTGGGACTTAGTTTTTTAGTGTA
TTTTGATATGGCATTCTAGGTACGTGGTTACCTGGGTGTTACAATGTATGTAGG