Detailed information on CNT30109911


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695974Oryza longistaminataOryza sativa56.8962.5792.02351forward
CNT30597242Oryza longistaminataOryza meridionalis38.7448.9894.56239forward
CNT30370210Oryza longistaminataOryza glumipatula41.9815.9693.05259forward
CNT30102949Oryza longistaminataOryza rufipogon54.6233.7395.25337forward
CNT30575755Oryza longistaminataOryza barthii43.11103.9190.98266forward
CNT30117497Oryza longistaminataOryza nivara55.5933.294.75343forward

Expression of CNT30109911

Peptides detected in this lncRNA

>peptide 1 (33 aa)
QPISGNATVSTRNTDALWTPLLRLCSSPGFHSS*

>peptide 2 (35 aa)
ANFRERDRVNSEHRRALDAAASPLLVARLPQFVTS*

>peptide 3 (83 aa)
SQFPGTRPCQLGTPTRSGRRCFAFARRPASTVRDKLSHFATSFINPCRSRIPKESTRGGPRWEILFFFPNSGRRRHSFPSPSL*

Sequence

>CNT30109911
CAGCCAATTTCCGGGAACGCGACCGTGTCAACTCGGAACACCGACGCGCTCTGGACGCCGCTGCTTCGCCTTTGCTCGTCGCCCGGCTTCCACAGTTCGT
GACAAGCTGAGCCACTTCGCCACGAGCTTCATCAACCCCTGTAGATCAAGAATCCCGAAGGAGTCGACACGAGGTGGACCACGGTGGGAGATCCTCTTCT
TCTTCCCCAACTCTGGCCGCCGACGCCATTCCTTTCCTTCTCCTTCTCTGTAGAAGCCCGGGAGTACACCGTCAACGACGACCGTAGCAGTCGCGCCGTC
GCCGAACCAGTACACCGTCGCCAAGACTTCGCCGAGCCGCGTTTGATTCTTGATAATTGCATAATCGGTGAAGGAGTGGATTAGGTGCTAACATTTCTCT
GATCAAGGCAAGTTTTCTCCTCCCATCCTTTGAACACATTGAATCCCATGATTTGAGGAATGAAAATATTTGTTTGCAAAGTTGCATGTGAACTTAGACT
ATATCGGTATTTGAAATTGGGTTAAGGTAGTTATGACCTATTTGCTGCATATCCCACCTTGAATAATTGATCCTCTTGCTGTTTGAACCCCTAGAAATGG
TTAGAGTACACTCTTTG