Detailed information on CNT30109885


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691405Oryza longistaminataOryza sativa10029.22100294forward
CNT30519803Oryza longistaminataSetaria italica45.5814.2982.09134forward
CNT30441953Oryza longistaminataAegilops tauschii32.3130.3587.3795forward
CNT30458825Oryza longistaminataSaccharum spontaneum21.0911.1788.7162forward

Expression of CNT30109885

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MTCPGHHPLKAKRETGSGSCSLSRCKNWWERPRRAAAQEQD

>peptide 2 (47 aa)
MMLLDDTNSSGKPPDSELWDKLRRIKPIRLPREGDPFPYTAVRAILP*

>peptide 3 (38 aa)
MPRPPSFESQARNWIRELLSFSVQELVGEAKKSSSARAR

Sequence

>CNT30109885
TGTCAGGTAGTTAAAACTGACATCAAGGATCATGATGCTGCTGGATGACACCAATTCCAGTGGTAAGCCACCAGACAGTGAGTTGTGGGACAAGTTGAGG
CGCATCAAGCCTATCAGGTTGCCAAGGGAAGGTGATCCCTTCCCATACACAGCAGTCCGTGCCATTCTTCCATGACATGCCCAGGCCACCATCCTTTGAA
AGCCAAGCGAGAAACTGGATCAGGGAGTTGCTCTCTTTCTCGGTGCAAGAACTGGTGGGAGAGGCCAAGAAGAGCAGCAGCGCAAGAGCAAGAC