Detailed information on CNT30109881


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690984Oryza longistaminataOryza sativa74.2759.799.611019forward
CNT30552577Oryza longistaminataOryza glaberrima77.4156.9798.681062forward
CNT30575370Oryza longistaminataOryza barthii70.0464.5898.75961forward

Expression of CNT30109881

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MTNNIIQKKKRSTCFEAVIDVKIHMCTGMERTD*

>peptide 2 (44 aa)
MPRPPSFESPVRNWTSELLSCSVQELEGEARKSSSTRAWPSIAF*

>peptide 3 (31 aa)
MLMNLDTYIYMNVGNTRKYYIMKRRECKFCL*

>peptide 4 (31 aa)
MVLAFGLRLLKSRLAAMLDQTAASLEGLRID*

>peptide 5 (50 aa)
MEEIFPRALSLTLRRLLFLPLSASKLWFWLTSKLQMAIGLRWFWPLDCDS*

>peptide 6 (46 aa)
MLLDDTSSSGKPPDSELWDKLRRIRPVRLPREGDPFPCAAVRAILP*

>peptide 7 (56 aa)
MLIEYTVSMAMIMSVKYKCRRAQVAIIKNQSYKELKISFRKMKAAARIDRTLFIFI*

>peptide 8 (46 aa)
MSRSTCVRAWKERINGGNISQGSLVDPEAFTFLAVVSIKALVLVNI*

>peptide 9 (45 aa)
MVKENVKNYKHIPACQVMTKQEKCLYGRYYISFWSVTFTDRFRYTV

Sequence

>CNT30109881
GTCACTCATGCCTCCTGTCATGTAGTTAAAACTGACATCAAGGACCACGATGCTGCTTGATGACACCAGTTCCAGCGGTAAGCCACCGGACAGCGAGTTG
TGGGACAAGTTGAGGCGCATCAGACCTGTGAGATTGCCAAGGGAAGGTGATCCCTTCCCATGCGCAGCAGTCCGTGCCATTCTTCCATGACATGCCCAGG
CCACCATCCTTCGAGAGCCCGGTGAGAAACTGGACGAGTGAGCTCCTCTCTTGCTCGGTGCAAGAACTGGAGGGAGAGGCCAGGAAGAGCAGCAGCACAA
GAGCATGGCCAAGCATCGCTTTCTAAGTTAACTATTCCCCACCCGCCACTACAGTTTATTGGAAAAACACATCCTTTTTTTTTGGCGAAAAGAAGGGACC
TCACAGATTTGCAAGATCGGATTGGTGAGGTACATGACAAACAACATCATTCAGAAAAAGAAAAGGAGCACATGTTTTGAAGCAGTCATCGATGTCAAGA
TCCACATGTGTACGGGCATGGAAAGAACGGATTAATGGAGGAAATATTTCCCAGGGCTCTCTCGTTGACCCTGAGGCGTTTACTTTTCTTGCCGTTGTCA
GCATCAAAGCTTTGGTTTTGGTTAACATCTAAGTTGCAAATGGCAATTGGTTTACGATGGTTTTGGCCTTTGGACTGCGACTCTTGAAGTCTAGATTAGC
AGCAATGCTGGACCAGACTGCAGCATCATTAGAGGGGCTGAGAATCGATTAGTCAGGTTAATGGCAGTGTTCATGTGATCATTAGCTGGTATTTCAGTAA
CCAGCAAAAAGATTGCTTGCATTTGTCTTTTCCTTTGGCAGATAAGGAGTACTTCTGATGTTGATAGAATATACTGTTTCTATGGCTATGATAATGTCTG
TCAAATACAAATGCAGAAGGGCACAAGTGGCTATCATTAAAAATCAAAGTTACAAGGAGTTAAAAATAAGTTTCAGGAAAATGAAGGCGGCAGCAAGAAT
TGACCGTACTCTTTTCATTTTTATCTAGTACTTCCTCCGTTTTATAATGTAAGGCTTTCTAACATTAACCACATTCGTATAGATGTTAATGAATCTAGAC
ACATATATTTATATGAATGTGGGTAATACTAGAAAGTATTACATTATGAAACGGAGGGAGTGTAAATTTTGTCTGTAACTATCAGTATGTTCTTTTGCCG
GGTCGGCCGAACGAGGCAGACCAAATTTCATTATGGTAAAGGAGAATGTAAAGAACTATAAGCATATTCCAGCATGTCAGGTAATGACCAAACAAGAAAA
ATGCTTGTATGGAAGATATTATATCAGCTTTTGGTCCGTCACTTTCACAGATCGGTTTAGATACACAGTCCC