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Detailed information on CNT30109864


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000427, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697923Oryza longistaminataOryza sativa77.9699.7398.531496forward
CNT30552893Oryza longistaminataOryza glaberrima90.6766.2495.111740forward
CNT30103930Oryza longistaminataOryza rufipogon96.9379.1593.491860forward
CNT30577378Oryza longistaminataOryza barthii90.6273.6293.961739forward
CNT30118054Oryza longistaminataOryza nivara59.7710095.91147forward
CNT30603852Oryza longistaminataOryza punctata3756.0891.55710forward

Expression of CNT30109864

Peptides detected in this lncRNA

>peptide 1 (36 aa)
IKTPSLSAVSWKAFRRTPWARAAASSLLHHRGIELR*

>peptide 2 (30 aa)
MIFENSALRKVTIATPCIILYITAFCVVAC*

>peptide 3 (29 aa)
MLIPIVKLFCLQIKLHAVMNILLVIMPCL*

>peptide 4 (64 aa)
MCESSLPGSARTPLTARNRVRLECMRTQVHGAGTAKVRLLKGFAVASLIRWDVGSCVGQVAEYG*

>peptide 5 (46 aa)
KNPISLCRFLEGISSNTLGACCSFFSAPPPRHRTSLILLPSKLYVG*

>peptide 6 (42 aa)
MIGVRFHSRSRSPVDCLWHVNRALVLFCLPLLFFDSCWPAWP*

>peptide 7 (38 aa)
MCVPTTDPGIGTDKHRRFPISKIGGRHIYSLEGNLKLR*

Sequence

>CNT30109864
ATAAAAACCCCATCTCTCTCTGCCGTTTCCTGGAAGGCATTTCGTCGAACACCTTGGGCGCGTGCTGCAGCTTCTTCTCTGCTCCACCACCGCGGCATCG
AACTTCGTTGATCCTCCTTCCCTCGAAATTGTATGTCGGTTAGTCGTGAGGCAACGTATGCAGCTTCCAGGAGGTGAAGGTTGATCAAGATTATATCAAG
AATAAGAACTATCCTGAGCAGGCAAGTCATCACCCCATTCCTTGAGCATGTTGATCCCAATTGTGAAATTGTTTTGTTTACAAATAAAATTGCATGCAGT
GATGAATATCCTACTTGTTATTATGCCATGCCTTTGATTATTGCTTATCTCATTATTCCCTTGTACCCATAATTACGTATGAGTCCCTAGTCACTTATGA
CAAATGCTTAGTAATGCTAATTTAGATTCATGCATTCTCATATTTATCAAATGCTTTATGCTTGGGCAACTACCTTGGGGAAGGTAGTTGAGATACGGCA
TGTGGAGACATGAGCGCTACATTGCCATGACATTGATGAGATGATTTGTGAAAGAAAGTTAAAACTAAACAAATGTTTTCGACTGGGGCGGCTGGAGGAC
TTGGGTGGTGTCCGGTAAAGGCTAGTGCTGTCCCTGGTCAATTAAGGACCGAGCCATGAAGCTAAGCATGAAACGACTCCAGTACAACCGTACTTCTCGT
ATGGGTATAGACCTAGCGGAGTAAATAGCCGAGCGGAGGCAGTATCCCTGCATAGTGGTTTTCTTGATGTGTGTGAGGCAGGGCCTACGGTGGGGCAGCC
ATTGGTAGGACCGCGAGGGGCGGGTGCCTACAGTGGTGTCGCCATCGGTAGGACTGCCATGTGTAAACCTAAACTTAACTATAACTTAATGCATGTGTGA
GTCTTCCCTTCCCGGGAGCGCCAGAACTCCTCTCACTGCTAGAAACCGTGTACGCCTAGAGTGCATGAGGACTCAAGTTCATGGAGCGGGTACTGCCAAA
GTGAGGTTGTTGAAAGGCTTTGCCGTGGCAAGTCTCATTCGTTGGGACGTAGGCTCATGTGTTGGGCAAGTCGCGGAGTACGGGTAAAGTGTACATCCAC
TGCAGTGTGAGTAAAACAAATCTATTCGAATAGCCGTGCTCGCGGTTATTGAGCACCGGGACATGTATTACACTTGGCTAGACTCTAAATTCTTAAAATG
ATGGGTGGGATGTTGCATGATGATTTTGTACTGGTGGATCAACTTCTCGAGAGGCGAGAAGGGGTAGACCCCAGAAAACCATGACGACCAGTGGCGGGAA
GCTATCCTTGGGAACACAATGGATGGTGGACAGAACCGTCGCTGTTTAATGAACAATGGAATTAAAACTTGATCAGTTTATGCTAGGTCTTAGGTTTGTG
AAATGATATTTGAAAACTCAGCTTTACGCAAAGTAACCATAGCCACTCCTTGTATTATCCTGTACATTACTGCATTTTGTGTGGTGGCTTGCTGAGTACT
TTTGTACTCATTGTTGCTCTATATATATCTTTTAGCAGAGTGTTGAAGAGAAGCCCTTGTTAGTACGCTTGCGTACTTAACAAGATGATCGGAGTGCGAT
TCCATTCTAGGTCTCGTTCCCCAGTCGACTGCTTGTGGCATGTCAACCGGGCCCTTGTATTATTTTGTCTTCCGCTGTTGTTCTTTGATAGTTGTTGGCC
TGCCTGGCCCTAATGTAAGCATTTAACTCTCTTAGCTTGAATTCATTCGTGATATGTTGTGATTCGGCTATGTATGTGTGTACCAACTACTGATCCAGGG
ATTGGTACTGATAAACACAGAAGATTTCCGATTTCCAAAATCGGGGGTCGACATATTTATAGCTTAGAGGGGAATCTGAAACTGAGATGAGGTGATGGTT
TTGCAATTTTCAATTTAGG