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Detailed information on CNT30109834


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000701, E-value = 5e-173

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692691Oryza longistaminataOryza sativa50.2886.1294.87273forward
CNT30289051Oryza longistaminataTriticum aestivum12.342991.0467forward
CNT30101494Oryza longistaminataOryza rufipogon50.287894.87273forward

Expression of CNT30109834

Peptides detected in this lncRNA

>peptide 1 (67 aa)
ELKNGIEGTTMTNTINLKFWLESLQQWTTDLFVYLSTSPYTQRNGRTCEMIYLLQDQQGKDAHQNDV*

>peptide 2 (32 aa)
MSNQDIYLLDLRIPGSWMSAEVLFPLPLKVDV*

Sequence

>CNT30109834
GAACTAAAGAATGGTATAGAAGGTACAACAATGACCAATACAATAAACCTGAAGTTTTGGTTAGAATCATTGCAGCAATGGACAACTGACCTATTCGTGT
ACCTCTCCACTTCTCCATATACACAAAGGAATGGTCGTACATGTGAGATGATTTACTTGCTGCAGGACCAGCAGGGCAAGGATGCACATCAAAATGATGT
ATAGACACACTCTTTACACAATAAAAGAAAATAAATACACCAAAAGGGAAAAAAATAAAAGATAATAAAGCACACTCTCTCCAGGCAATCCATTCTCCTG
ATCCTTACATGGATGTTCAAAATTCTCTTCTTTGAACAGGGAGAAATGGCATTCGTTGTGTAATTGCCTCGTTGACACCTATGAGCAACCAAGACATTTA
CTTACTGGACCTAAGAATTCCAGGAAGCTGGATGTCGGCTGAGGTGTTGTTTCCTCTGCCCTTAAAGGTAGATGTCTGAGGAATGCCCTGACTGCACCTG
ACACACCATCTTCAGATTCCATGGCCTTGGCAAGCTCCACGGC