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Detailed information on CNT30109742


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697041Oryza longistaminataOryza sativa18.3146.7193.54263forward
CNT30371082Oryza longistaminataOryza glumipatula26.1168.5690.93375forward

Expression of CNT30109742

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MRRSLLEKPSFLPVRNPLYSVVANREGESGTKDGDL*

>peptide 2 (43 aa)
YKNKRYEVSGQEWIYQRNLHHNLYPTMLPWLALPDLLPPIHIV*

>peptide 3 (58 aa)
MPELRISVFRGILDQARKSLIFKLLFEYAIRNRGCVELVEKCEIEYKFVVIVVPSYFR*

>peptide 4 (30 aa)
IKTSGTRYQGKNGSTKETFTITYTQLCCHG*

>peptide 5 (32 aa)
MVWIVWVISLLSYLPTACRGCPYFQGRLCQNF*

Sequence

>CNT30109742
TTATAAAAACAAGCGGTACGAGGTATCAGGGCAAGAATGGATCTACCAAAGAAACCTTCACCATAACCTATACCCAACTATGCTGCCATGGCTAGCTCTT
CCTGATCTTCTTCCACCAATCCACATAGTGTGAGAAAAACTCAACAAGAGCAACCACACCTTATAGAAGGCACAAGTACTACAATTCTTCAGAGGGGCAA
TGACTTGAGGGCTACCTCACAGAGCAAGTGAAGCCACCGTCGTCGTCCTCAAGACGGAGAGCGAAGAGGAAACCGTGGCCAGCAATGTAATGCCCGAGCT
TCGGATTAGTGTATTTCGGGGAATATTAGATCAAGCGCGTAAAAGTTTAATTTTTAAACTGTTGTTTGAATATGCGATCAGGAACCGTGGATGCGTAGAG
CTCGTCGAGAAGTGCGAAATAGAATATAAGTTTGTGGTAATCGTAGTCCCGAGTTATTTCCGGTGATCGATTTAATATGGGCCGTTCGATCTTCATTAGC
CTCTCCCTATTTAACCAATAGAAGAAAAAAAAAAGAAAAAAACAAGGAGGCATCACTAGCTGCTAGCCCTAGCCGCCGCCGTCCGCGTCTGCACCTCTGC
GCCGCCGCTGCTGTGCGTCCGACGCCGGTCGCCACAACCATCGTCTCCTTGAGGAGGGAGGAGGTTCTGAAGGCACATGAAAGCAAGAGGGGAAAAGGAG
GAAAAAAAAAAGAGAGATGTTCTATTTACATTATTCAAGAACCATGCGTAGACGTGGGAGTGCAATTTGGGTCTTTATTCATGATCCTTGAGAAGCGCTG
ATCACGCTTGTTCGGCTTACTGGTATCTAATAACATTGATCGGCATGAGGCGGGAGTAGCACCCTTGGACTAGACATTATTATGGCACACTATTGAAATT
TAGTTTTAGACTATATTTTTGCTCAGCATAAGTTTTGCATAGAACCTGTAAAGGTCATTTAAAGTTTTGGTCTTTATTTTCACGTGGAATTTATGGAGCT
AGGATGGTTTGGATTGTGTGGGTTATTTCGTTATTGAGTTATCTTCCAACTGCTTGTCGTGGATGTCCGTATTTTCAAGGGAGACTCTGCCAAAATTTTT
AATAATTTTGGGAGTTAGTAGTTTTTGAGTATTTTTTGGTGTGGCACTCTAGGTACGTGGTTACCTGGGGTGTTACAAGCAACCCCACTTATAAGGAGTG
GGGTATCCACGGATCAAGTCATAGGGTATCTGTTGTCTTTCATATCGAGGGATATCTTGGTCCAAGTCGCAACGTCCTCAACAACCGCCACAGCAAGGAG
GACCAATGAGGAGATCACTACTGGAGAAACCCTCTTTTCTCCCGGTTCGCAACCCCCTTTACTCCGTGGTAGCGAACCGGGAGGGAGAATCCGGGACTAA
AGATGGCGATCTTTAGTCCCGGTTCAAATACCCGGG